RetrogeneDB ID: | retro_sscr_1016 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 8:141303561..141303926(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBCH5B | ||
Ensembl ID: | ENSSSCG00000029822 | ||
Aliases: | None | ||
Description: | Sus scrofa ubiquitin-conjugating enzyme E2D 2 (UBE2D2), mRNA. [Source:RefSeq mRNA;Acc:NM_001078673] |
Percent Identity: | 70.97 % |
Parental protein coverage: | 83.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IDKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH |
I.KE.SDLA.DP..Q.SAG...DDMFHWQAT...P.DSPY.GGVFFL..HFP.D.P.KPPK.A..T..YH | |
Retrocopy | INKEFSDLASDPREQSSAGSAADDMFHWQATTTAPSDSPYRGGVFFLRVHFPADDPLKPPKPAYAT*TYH |
Parental | PNINSNGSICLDILRSQW-SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK |
PNINSNGS.C..ILR.Q..SPALTIS.VLLSICS.LCDPNPD.PLVPE.A.I.K | |
Retrocopy | PNINSNGSTCRYILRLQC<SPALTISEVLLSICS-LCDPNPDNPLVPETAQIIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 0 .00 RPM |
SRP014902_testis | 0 .00 RPM | 0 .00 RPM |
SRP018288_heart | 0 .00 RPM | 0 .71 RPM |
SRP018288_kidney | 0 .00 RPM | 0 .20 RPM |
SRP018288_liver | 0 .00 RPM | 0 .16 RPM |
SRP018288_lung | 0 .00 RPM | 0 .61 RPM |
SRP018856_adipose | 0 .00 RPM | 0 .06 RPM |
SRP035408_brain | 0 .00 RPM | 0 .00 RPM |
SRP035408_liver | 0 .00 RPM | 0 .00 RPM |