RetrogeneDB ID: | retro_hsap_2587 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 22:39119014..39119509(-) | ||
Located in intron of: | ENSG00000100226 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000229598 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX3 | ||
Ensembl ID: | ENSG00000165672 | ||
Aliases: | PRDX3, AOP-1, AOP1, HBC189, MER5, PRO1748, SP-22, prx-III | ||
Description: | peroxiredoxin 3 [Source:HGNC Symbol;Acc:9354] |
Percent Identity: | 86.31 % |
Parental protein coverage: | 64.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAAAVGRLLRASVARHVSAIPWGISATAALRPAACGRTSLTNLLCSGSSQAKLFSTSSSCHAPAVTQHAP |
M.AAVGRLL.AS.ARHVSAIPWGISATAAL..AA.GRTSLTN.L.SGSSQAK.FSTSSS.HAPAV.QHAP | |
Retrocopy | MVAAVGRLL*ASAARHVSAIPWGISATAALKLAASGRTSLTNILWSGSSQAKFFSTSSSYHAPAVAQHAP |
Parental | YFKGTAVVNGEFKDLSLDDFKGK-YLVLFFYPLDFTFVC-PTEIVAFSDKANEFHDVNCEVVAVSVDSHF |
YFKGTA.VNGEFKDLSLDDFKGK..LVLFFYPLDFTFV..PTE.VAFSDKA.EFHDVNCEVV.VSVDSHF | |
Retrocopy | YFKGTAIVNGEFKDLSLDDFKGK>NLVLFFYPLDFTFVV<PTETVAFSDKAKEFHDVNCEVV-VSVDSHF |
Parental | SHLAWINTPRKNGGLGHMNIALLSDLTK |
SHLAWINTPR.NGGL.HMNI.LLSDL.K | |
Retrocopy | SHLAWINTPRNNGGLDHMNIPLLSDLSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .18 RPM | 71 .72 RPM |
bodymap2_adrenal | 0 .37 RPM | 116 .45 RPM |
bodymap2_brain | 0 .12 RPM | 99 .17 RPM |
bodymap2_breast | 0 .41 RPM | 173 .02 RPM |
bodymap2_colon | 0 .19 RPM | 122 .43 RPM |
bodymap2_heart | 0 .06 RPM | 220 .11 RPM |
bodymap2_kidney | 0 .02 RPM | 256 .81 RPM |
bodymap2_liver | 0 .00 RPM | 191 .04 RPM |
bodymap2_lung | 0 .98 RPM | 84 .81 RPM |
bodymap2_lymph_node | 0 .40 RPM | 119 .97 RPM |
bodymap2_ovary | 0 .56 RPM | 88 .75 RPM |
bodymap2_prostate | 0 .76 RPM | 140 .80 RPM |
bodymap2_skeletal_muscle | 0 .09 RPM | 119 .64 RPM |
bodymap2_testis | 0 .13 RPM | 91 .25 RPM |
bodymap2_thyroid | 0 .28 RPM | 188 .11 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 112 .81 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .17 RPM |
CEU_NA11930 | 0 .46 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .18 RPM |
CEU_NA12751 | 0 .53 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .19 RPM |
CEU_NA12872 | 0 .27 RPM |
CEU_NA12873 | 0 .26 RPM |
FIN_HG00183 | 0 .27 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .30 RPM |
FIN_HG00328 | 0 .21 RPM |
FIN_HG00338 | 0 .17 RPM |
FIN_HG00349 | 0 .14 RPM |
FIN_HG00375 | 0 .20 RPM |
FIN_HG00377 | 0 .08 RPM |
FIN_HG00378 | 0 .06 RPM |
GBR_HG00099 | 0 .12 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .24 RPM |
GBR_HG00131 | 0 .20 RPM |
GBR_HG00133 | 0 .19 RPM |
GBR_HG00134 | 0 .15 RPM |
GBR_HG00137 | 0 .22 RPM |
GBR_HG00142 | 0 .25 RPM |
GBR_HG00143 | 0 .13 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .17 RPM |
TSI_NA20518 | 0 .11 RPM |
TSI_NA20532 | 0 .34 RPM |
TSI_NA20538 | 0 .14 RPM |
TSI_NA20756 | 0 .09 RPM |
TSI_NA20765 | 0 .35 RPM |
TSI_NA20771 | 0 .28 RPM |
TSI_NA20786 | 0 .05 RPM |
TSI_NA20798 | 0 .31 RPM |
YRI_NA18870 | 0 .10 RPM |
YRI_NA18907 | 0 .14 RPM |
YRI_NA18916 | 0 .11 RPM |
YRI_NA19093 | 0 .08 RPM |
YRI_NA19099 | 0 .24 RPM |
YRI_NA19114 | 0 .08 RPM |
YRI_NA19118 | 0 .21 RPM |
YRI_NA19213 | 0 .29 RPM |
YRI_NA19214 | 0 .12 RPM |
YRI_NA19223 | 0 .20 RPM |