RetrogeneDB ID: | retro_hsap_1849 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 17:58179597..58179942(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S2 | ||
Ensembl ID: | ENSG00000182287 | ||
Aliases: | AP1S2, MGC:1902, MRX59, MRXS21, MRXS5, MRXSF, PGS, SIGMA1B | ||
Description: | adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560] |
Percent Identity: | 100. % |
Parental protein coverage: | 75.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSV |
KKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSV | |
Retrocopy | KKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSV |
Parental | CELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQE |
CELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQE | |
Retrocopy | CELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 56 .49 RPM |
bodymap2_adrenal | 0 .02 RPM | 51 .93 RPM |
bodymap2_brain | 0 .05 RPM | 71 .49 RPM |
bodymap2_breast | 0 .14 RPM | 44 .09 RPM |
bodymap2_colon | 0 .08 RPM | 105 .96 RPM |
bodymap2_heart | 0 .06 RPM | 130 .50 RPM |
bodymap2_kidney | 0 .14 RPM | 31 .99 RPM |
bodymap2_liver | 0 .00 RPM | 9 .89 RPM |
bodymap2_lung | 0 .00 RPM | 36 .87 RPM |
bodymap2_lymph_node | 0 .04 RPM | 66 .97 RPM |
bodymap2_ovary | 0 .02 RPM | 36 .36 RPM |
bodymap2_prostate | 0 .00 RPM | 47 .86 RPM |
bodymap2_skeletal_muscle | 0 .05 RPM | 64 .95 RPM |
bodymap2_testis | 0 .04 RPM | 121 .00 RPM |
bodymap2_thyroid | 0 .00 RPM | 60 .41 RPM |
bodymap2_white_blood_cells | 0 .22 RPM | 350 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1234 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004393 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013888 | 1 retrocopy | |
Homo sapiens | ENSG00000100478 | 1 retrocopy | |
Homo sapiens | ENSG00000106367 | 1 retrocopy | |
Homo sapiens | ENSG00000182287 | 1 retrocopy |
retro_hsap_1849 ,
|
Macaca mulatta | ENSMMUG00000014055 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017197 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000011342 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000000733 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013119 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008517 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .07 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .15 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .11 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .08 RPM |
GBR_HG00099 | 0 .12 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .05 RPM |
GBR_HG00134 | 0 .11 RPM |
GBR_HG00137 | 0 .14 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .53 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .09 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .17 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .08 RPM |