RetrogeneDB ID: | retro_hsap_3496 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:89769346..89769780(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000220960 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP4S1 | ||
Ensembl ID: | ENSG00000100478 | ||
Aliases: | AP4S1, AP47B, CLA20, CLAPS4, CPSQ6, SPG52 | ||
Description: | adaptor-related protein complex 4, sigma 1 subunit [Source:HGNC Symbol;Acc:575] |
Percent Identity: | 93.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLS-RSNEQCSFIE-YKDFKLIYRQYAALFIV |
MIKFFLMVNKQGQTRL.KYYEHVDINK.TLLETEVIKSCLS.RSNEQCSFIE.YKDFKLIYRQYA.LF.V | |
Retrocopy | MIKFFLMVNKQGQTRLFKYYEHVDINKHTLLETEVIKSCLS>RSNEQCSFIE>YKDFKLIYRQYASLFVV |
Parental | VGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAPLLIL |
VGVNDTEN.MAIYEFIHNFVEVLDEYFS.VSELDIMFNLDKVH.ILDEMVLNG.IVETNRARILAPLLIL | |
Retrocopy | VGVNDTENKMAIYEFIHNFVEVLDEYFS*VSELDIMFNLDKVHTILDEMVLNGYIVETNRARILAPLLIL |
Parental | DKMSES |
DKMSES | |
Retrocopy | DKMSES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 2 .76 RPM |
bodymap2_adrenal | 0 .00 RPM | 7 .04 RPM |
bodymap2_brain | 0 .00 RPM | 13 .85 RPM |
bodymap2_breast | 0 .00 RPM | 4 .86 RPM |
bodymap2_colon | 0 .00 RPM | 8 .86 RPM |
bodymap2_heart | 0 .00 RPM | 6 .48 RPM |
bodymap2_kidney | 0 .00 RPM | 4 .63 RPM |
bodymap2_liver | 0 .00 RPM | 1 .60 RPM |
bodymap2_lung | 0 .00 RPM | 3 .29 RPM |
bodymap2_lymph_node | 0 .02 RPM | 7 .11 RPM |
bodymap2_ovary | 0 .02 RPM | 12 .82 RPM |
bodymap2_prostate | 0 .00 RPM | 9 .06 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 2 .47 RPM |
bodymap2_testis | 0 .06 RPM | 13 .40 RPM |
bodymap2_thyroid | 0 .00 RPM | 11 .90 RPM |
bodymap2_white_blood_cells | 0 .08 RPM | 5 .16 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2368 |
Gorilla gorilla | retro_ggor_2363 |
Pongo abelii | retro_pabe_2889 |
Macaca mulatta | retro_mmul_17 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013301 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000009468 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013009 | 1 retrocopy | |
Homo sapiens | ENSG00000100478 | 1 retrocopy |
retro_hsap_3496 ,
|
Homo sapiens | ENSG00000106367 | 1 retrocopy | |
Homo sapiens | ENSG00000182287 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003198 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017579 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015901 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000014031 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005723 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006239 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017161 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010759 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |