RetrogeneDB ID:

retro_ogar_265

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873551.1:18385011..18385494(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000031766
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:AP1S2
Ensembl ID:ENSOGAG00000011342
Aliases:None
Description:adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560]


Retrocopy-Parental alignment summary:






>retro_ogar_265
ATGCAGGTGATGCTGCTTTTTAGCCGCCAGGGCAAGCTTCGGCTGCAGAAATGGTACGTCCCGCTACCCGACAAAGAGAA
GAAAAAGATTACCACGGAACTCGTTCAGACCGTGTTAGCCCGGAAACCTAAAATGTGCGGCTTTCTCGAGTGGCGAGATC
TGAAGATTGTTTACAAAACATACGCCAGTCTGTATTTTTGCTGTGCTACTGAGGATCAGGACAATGAACTAATTACCCTG
GAAATAATTCATCGTTACGTGGAATTACTTGACAAGTGTTTTGGCAGTGTGAGTGAACTGGATATCATCTTTAAGTTTGA
GAAGGCTTATTTTATTTTAGATGAGTTTCTTTTGGGAGGGGAAGTTCAGGAAACATCCAAGAAAAATGTCCTTACAGCCA
TCCAGCAGGCCGACCTACTGCAGGAAAAAACAGAGAGTATGTGTCACGGCAAGAGCTTCATTGGCTGTAAGAAAACGTAC
TAG

ORF - retro_ogar_265 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.81 %
Parental protein coverage: 87.97 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQ
MLLFSRQGKLRLQKWYVPL.DKEKKKIT.ELVQTVLARKPKMC.FLEWRDLKIVYK.YASLYFCCA.EDQ
RetrocopyMLLFSRQGKLRLQKWYVPLPDKEKKKITTELVQTVLARKPKMCGFLEWRDLKIVYKTYASLYFCCATEDQ
ParentalDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQE
DNELITLEIIHRYVELLDK.FGSV.ELDIIF.FEKAYFILDEFLLGGEVQETSKKNVL.AI.QADLLQE
RetrocopyDNELITLEIIHRYVELLDKCFGSVSELDIIFKFEKAYFILDEFLLGGEVQETSKKNVLTAIQQADLLQE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_265 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000204201 retrocopy
Callithrix jacchus ENSCJAG000000043931 retrocopy
Dasypus novemcinctus ENSDNOG000000138881 retrocopy
Homo sapiens ENSG000001822871 retrocopy
Macaca mulatta ENSMMUG000000140551 retrocopy
Monodelphis domestica ENSMODG000000171977 retrocopies
Otolemur garnettii ENSOGAG00000011342 3 retrocopies
retro_ogar_2038, retro_ogar_265 , retro_ogar_3453,
Procavia capensis ENSPCAG000000007331 retrocopy
Pteropus vampyrus ENSPVAG000000102181 retrocopy
Sorex araneus ENSSARG000000001171 retrocopy
Sarcophilus harrisii ENSSHAG000000131192 retrocopies
Sus scrofa ENSSSCG000000121421 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000085171 retrocopy
Tupaia belangeri ENSTBEG000000088342 retrocopies
Tarsius syrichta ENSTSYG000000052902 retrocopies
Vicugna pacos ENSVPAG000000076421 retrocopy



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