RetrogeneDB ID: | retro_pcap_386 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_645:132517..132930(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S2 | ||
Ensembl ID: | ENSPCAG00000000733 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560] |
Percent Identity: | 66.19 % |
Parental protein coverage: | 87.26 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPK-MCSFLEWRDLKIVYKRYASLY-FCCAIED |
LLFS..............S.K....ITRE.VQ..LA.KPK.M.SFLEWRDLKIVY.R.ASLY...CAI.D | |
Retrocopy | LLFSESDPSPAETVCSIISGKDXXXITREFVQAILAHKPK>MYSFLEWRDLKIVYTR*ASLY>LDCAIKD |
Parental | QDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQ |
QDNELITLEII..Y.ELLDKYFGSV.E.D.IFNFEKA.FI.DEFL.GGE.QETS..N.L...EQADLLQ | |
Retrocopy | QDNELITLEIIYHYLELLDKYFGSVSEPDSIFNFEKACFISDEFL*GGEGQETSTENLLQVTEQADLLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020420 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004393 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013888 | 1 retrocopy | |
Homo sapiens | ENSG00000182287 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014055 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017197 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000011342 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000000733 | 1 retrocopy |
retro_pcap_386 ,
|
Pteropus vampyrus | ENSPVAG00000010218 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000117 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013119 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000012142 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008517 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008834 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000005290 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007642 | 1 retrocopy |