RetrogeneDB ID: | retro_itri_131 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393563.1:562271..562616(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000004110 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000008517 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.07 % |
Parental protein coverage: | 54.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LQRWCVILTDAVYKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIH |
L..W...LTD....K.TRELVQT.LA.KPKMCSFLE..DLKIV.KRYA.L..CCAIEDQDNEL...EIIH | |
Retrocopy | LKKWYIPLTDKEKEKTTRELVQTILAQKPKMCSFLECLDLKIVHKRYARLCICCAIEDQDNELTHPEIIH |
Parental | RYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKK |
.YVELLDKYFGSVC.LDIIFNFEKAYFILDEFLLGG.VQ.TSKK | |
Retrocopy | HYVELLDKYFGSVCKLDIIFNFEKAYFILDEFLLGGKVQGTSKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020420 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004393 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013888 | 1 retrocopy | |
Homo sapiens | ENSG00000182287 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014055 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017197 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000011342 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000000733 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010218 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000117 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013119 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000012142 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008517 | 1 retrocopy |
retro_itri_131 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000010759 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008834 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000005290 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007642 | 1 retrocopy |