RetrogeneDB ID: | retro_mdom_903 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:369652015..369652340(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S2 | ||
Ensembl ID: | ENSMODG00000017197 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560] |
Percent Identity: | 60.55 % |
Parental protein coverage: | 68.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SDKEKKKITREL-VQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLD |
S...K.KITRE.....VLA.KPK..SFL...DLK..YK.YASL...CAI...DNEL..L.IIH.YV.LLD | |
Retrocopy | SQIKKRKITREI>IESVLADKPKIYSFLD**DLKTIYKLYASLFLFCAIDY*DNELNILGIIHPYVFLLD |
Parental | KYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNV |
KYFGS..E.DIIFNFE...F.L.E.LL.G.V.ET.K.NV | |
Retrocopy | KYFGSAYENDIIFNFEQVHFTLNELLLEGAVWETPKENV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |