RetrogeneDB ID: retro_mluc_561

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429768:13431929..13432886(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028737
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: HNRNPK
• Ensembl ID: ENSMLUG00000005871
• Aliases: None
• Description: None

Sequence

>retro_mluc_561
TGCGAATTGAGACGGTTGATTCATCAGAGTCTGGCAGGAGGGATTATTGGGGTCAAAGGTGCTAAAATCAAAGAACTTCG
AGAGGACACTCAGACAACAATCAAGCTTTTCCAGGAATGCTGTCCTCATTCCACTGACAGAGTCGTTCCTATTGGAGGAA
AACCTGATAGGGTTGTAGAGTGCATAAAGATCATCCTTGATCTTATATCAGAGTCGCCCATCAATGGACGTGCACAGCCT
TATGATTCCAACATTTATGATGAAACTTATGATTATGGTGGCTTTACTATGATGTTTGATGACCGCTGTGGCCGTCCTGT
GGGATATCCCATGCAGGGAAGAGGTGGTTTTGACAGAATGCCTCCTGGTCGGGGTGGGCGCCCCATGCCTCCATCTAGAA
GAGATTGTGATGATATGAGCCCTCGTGAGGACCTCCTCCCCCTCCTCCTGGACGAGGTGGCCAGGGTGGTAGCAGAGCTC
GTAATCTTCCTCTTCCTCCACCACCACCACCTAGAGGAGGGGATCTAATGGGCCTATGACAGGAGAGGAAGACCTGGAGA
TCGTTATGATGGCATGGTTGGTTTCAGTGCCGATGAAACTTGGGACTCTGCAATAGATACATGGAGCCCTTCAGAATGGC
AGACGGCTTATGAACCACAGGGTGGCTCTGGGTATGATTATTCCTATGCAGGGGGTCGTGGCTCATATGGTGATCTTGGT
GGACCTATTACAACACAAGTAACTATTCCCAAGGATTTGGCTGGATCTATAATTGGCAAAGGTGGTCAGAGGATTAAACA
AATTTGTCATGAGTCAGGAGCTTCGATCAACATTGATGAGCCTTTAGAAGGGTCCGAAGATCGGATCATTACCATTACAG
GAACACAGGACCAGATACAGAATGCACAGTATTTGCTGCAGAACAGTGTGAGGCAGTATGCAGATGTTGAAGGATTC

Alignment

ORF - retro_mluc_561 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.1 %
• Parental protein coverage: 68.97 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLIS
          CELR.LIHQSLAGGIIGVKGAKIKELRE.TQTTIKLFQECCPHSTDRVV.IGGKPDRVVECIKIILDLIS
Retrocopy CELRRLIHQSLAGGIIGVKGAKIKELREDTQTTIKLFQECCPHSTDRVVPIGGKPDRVVECIKIILDLIS

Parental  ESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMS
          ESPI.GRAQPYD.N.YDETYDYGGFTMMFDDR.GRPVG.PM.GRGGFDRMPPGRGGRPMPPSRRD.DDMS
Retrocopy ESPINGRAQPYDSNIYDETYDYGGFTMMFDDRCGRPVGYPMQGRGGFDRMPPGRGGRPMPPSRRDCDDMS

Parental  PRR-GPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLM-AYDRRGRPGDRYDGMVGFSADETWDSAIDTW
          PR..GPPPPPPGRGG.GGSRARNLPLPPPPPPRGGDLM.AYDRRGRPGDRYDGMVGFSADETWDSAIDTW
Retrocopy PRE<GPPPPPPGRGGQGGSRARNLPLPPPPPPRGGDLM>AYDRRGRPGDRYDGMVGFSADETWDSAIDTW

Parental  SPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIK
          SPSEWQ.AYEPQGGSGYDYSYAGGRGSYGDLGGP.ITTQVTIPKDLAGSIIGKGGQRIKQI.HESGASI.
Retrocopy SPSEWQTAYEPQGGSGYDYSYAGGRGSYGDLGGP-ITTQVTIPKDLAGSIIGKGGQRIKQICHESGASIN

Parental  IDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
          IDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV.QYADVEGF
Retrocopy IDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVRQYADVEGF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_561 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 17 parental genes, and 38 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000021131	2 retrocopies	retro_btau_468, retro_btau_605,
Homo sapiens	ENSG00000165119	3 retrocopies	retro_hsap_2323, retro_hsap_2674, retro_hsap_3385,
Macropus eugenii	ENSMEUG00000006975	3 retrocopies	retro_meug_271, retro_meug_357, retro_meug_484,
Microcebus murinus	ENSMICG00000015780	3 retrocopies	retro_mmur_1562, retro_mmur_235, retro_mmur_448,
Myotis lucifugus	ENSMLUG00000003074	1 retrocopy	retro_mluc_574,
Myotis lucifugus	ENSMLUG00000005871	2 retrocopies	retro_mluc_128, retro_mluc_561 ,
Myotis lucifugus	ENSMLUG00000009971	3 retrocopies	retro_mluc_2199, retro_mluc_314, retro_mluc_571,
Macaca mulatta	ENSMMUG00000018871	1 retrocopy	retro_mmul_2111,
Monodelphis domestica	ENSMODG00000008402	1 retrocopy	retro_mdom_1666,
Mus musculus	ENSMUSG00000021546	2 retrocopies	retro_mmus_1131, retro_mmus_2137,
Otolemur garnettii	ENSOGAG00000007478	3 retrocopies	retro_ogar_2635, retro_ogar_2966, retro_ogar_3086,
Pongo abelii	ENSPPYG00000019327	3 retrocopies	retro_pabe_2105, retro_pabe_2106, retro_pabe_42,
Sarcophilus harrisii	ENSSHAG00000017109	1 retrocopy	retro_shar_820,
Sus scrofa	ENSSSCG00000022760	1 retrocopy	retro_sscr_437,
Tupaia belangeri	ENSTBEG00000001289	1 retrocopy	retro_tbel_2491,
Tursiops truncatus	ENSTTRG00000004906	1 retrocopy	retro_ttru_1622,
Tursiops truncatus	ENSTTRG00000016693	7 retrocopies	retro_ttru_1144, retro_ttru_180, retro_ttru_1922, retro_ttru_444, retro_ttru_813, retro_ttru_930, retro_ttru_937,