RetrogeneDB ID: | retro_shar_820 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL867584.1:2827145..2828058(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000017109 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.37 % |
Parental protein coverage: | 73.54 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 4 |
Parental | METEQPEETFPNTETN-GEFGKRPAEDMEEEQAFKRSRNTDEMVELRILL-QSKNAGAVIGKGGKNIKAL |
ME.EQPE.TF..TET..G...K..A..ME..QA.KRSRNTDEMVE..ILL..SKNAG.V..KGG.NIK.. | |
Retrocopy | MENEQPEATFSSTETR<GGLVKCSAKYMEGKQALKRSRNTDEMVEVHILL<KSKNAGTVLRKGGENIKTF |
Parental | RTDY-NASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH |
.TDY..ASVS..DSS.PE..LSISADI.T.GEI.KKIIP..E.GL.LPSPTATSQL.L.SDA.ECL.YQH | |
Retrocopy | YTDY>TASVSILDSSCPEHVLSISADIKTNGEIWKKIIPR*EKGL*LPSPTATSQLLLGSDARECLSYQH |
Parental | YKGSDFDCELRLLIHQ-SLAGGIIGVKGAKIKELRENTQTTIKLFQE-CCPHSTDRVVLIGGKPDRVVEC |
.KGS.FDC..RLLIH....A..IIGVKGAKIKEL..NTQTT.KLF.E.CC.HST.RVV..GGK.DRVVE. | |
Retrocopy | FKGSNFDCK*RLLIHH<QMARRIIGVKGAKIKEL*KNTQTTSKLFRECCCLHSTKRVVISGGKLDRVVEY |
Parental | IKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGR-GGFDRMPPGRGGRPMP |
.K..LDLI.ESP.KG.AQP.DP.F.DETYD.GGFTM..DDR.G..VGFP..G..G...RMP....G.PMP | |
Retrocopy | RKTTLDLIYESPVKGCAQPCDPSFHDETYDCGGFTMKCDDR*GCSVGFPL*GKEGSVHRMPSAPDGCPMP |
Parental | PSRRDYDDMSPRRGPPPPPPGRGGRGGSR |
.SRR.YD..SP.R.P.P.PP..GG....R | |
Retrocopy | QSRRHYDEVSPCREPLPLPP*CGGKVAER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |