RetrogeneDB ID:

retro_ogar_2635

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873642.1:4950923..4951913(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000007478
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_2635
TACCAGCACTATAAAGGAAATGACATTGACTGCAAGTTGAGACTGTTGATTCATCAGAGTCTGGCAGGAGGAATTATTGG
GGTGAAAAGTGCTTAAATCAAAGAACTTTGAGAGAACACTCAAACATCAATCAAGCTGTTCCAGGAATGCTGTCCTCATT
CCAGTGACAGAGTCATTCTTATTGGAGAAAAACTTGATAGGGTCGTAGAGTTCATAAAGATCATCCTTGATCTTATATCT
GAGTCTCCCATCAAAGGATGTGCACAGCCTTATGATCCCAATTTTTATGATGAAACCTATGACTATGGTGGTTTTACAAT
GATGTTTGATGACCACTGTGGATAACCTGTGGGTTTCCCAGTGCAAGGAAGAGGTAGTTTTGACAGAATGCCTCCTGGTT
GGGGTGGGCGTCTTATGCCTCCATCTAGAAGAGATTAAGATGACATGAGCCCTCATAGAAGACCACCTCCCCCTCCTCCT
GGACGAGGCGGCCGGGGTGGTAGCAGAGCTCAGAATCTCCCTCTTCTTCCACCACCACCACCTAGAGGAGGAGATCTAAT
GGCCTATGACAGAAGAAGAAGACCTGGAGACCGTTAGGATGGAATGGTTCGTTTCAGTGCTGATGAAACTATCGATTCTG
CAATAGATACATGGAGCCCATCAGAATGGTGGATGGCATATGAACCACAGGGTGGCTCCAGATATGCTTATTCCTATGCA
GGGGGTCATAGCTCATATGGTGATCTTGGTGGACCTATTATTACTACACAAGTAACTATTCCCAAAGATTTGGCTGGATC
TATTATTGGCAAAGGTGGTCAGCAGATTAAACAAATCTGTCATGAGTCAGGAGCTTCCATCAAAATCAATGAGCCTTTAG
AAGGATCCAAAGATCGGATCATTACCATTACAGGAACACAGGACCAGATACAGAATGCACAGTATTTACTGCAGAAAAGT
GTGAAGCAGTAGGCAGATGTTGAAGGATTC

ORF - retro_ogar_2635 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.58 %
Parental protein coverage: 75. %
Number of stop codons detected: 6
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
YQHYKG.D.DC.LRLLIHQSLAGGIIGVK.A.IKEL.ENTQT.IKLFQECCPHS.DRV.LIG.K.DRVVE
RetrocopyYQHYKGNDIDCKLRLLIHQSLAGGIIGVKSA*IKEL*ENTQTSIKLFQECCPHSSDRVILIGEKLDRVVE
ParentalCIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMP
.IKIILDLISESPIKG.AQPYDPNFYDETYDYGGFTMMFDD..G.PVGFP..GRG.FDRMPPG.GGR.MP
RetrocopyFIKIILDLISESPIKGCAQPYDPNFYDETYDYGGFTMMFDDHCG*PVGFPVQGRGSFDRMPPGWGGRLMP
ParentalPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADET
PSRRD.DDMSP.R.PPPPPPGRGGRGGSRA.NLPL.PPPPPRGGDLMAYDRR.RPGDR.DGMV.FSADET
RetrocopyPSRRD*DDMSPHRRPPPPPPGRGGRGGSRAQNLPLLPPPPPRGGDLMAYDRRRRPGDR*DGMVRFSADET
ParentalWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR
.DSAIDTWSPSEW.MAYEPQGGS.Y.YSYAGG..SYGDLGGPIITTQVTIPKDLAGSIIGKGGQ.IKQI.
RetrocopyIDSAIDTWSPSEWWMAYEPQGGSRYAYSYAGGHSSYGDLGGPIITTQVTIPKDLAGSIIGKGGQQIKQIC
ParentalHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
HESGASIKI.EPLEGS.DRIITITGTQDQIQNAQYLLQ.SVKQ.ADVEGF
RetrocopyHESGASIKINEPLEGSKDRIITITGTQDQIQNAQYLLQKSVKQ*ADVEGF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2635 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 50 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000211312 retrocopies
Choloepus hoffmanni ENSCHOG000000108322 retrocopies
Dasypus novemcinctus ENSDNOG000000000264 retrocopies
Dipodomys ordii ENSDORG000000160241 retrocopy
Homo sapiens ENSG000001651193 retrocopies
Gorilla gorilla ENSGGOG000000155002 retrocopies
Loxodonta africana ENSLAFG000000265671 retrocopy
Macropus eugenii ENSMEUG000000069753 retrocopies
Microcebus murinus ENSMICG000000157803 retrocopies
Myotis lucifugus ENSMLUG000000058712 retrocopies
Macaca mulatta ENSMMUG000000188711 retrocopy
Monodelphis domestica ENSMODG000000084021 retrocopy
Mus musculus ENSMUSG000000215462 retrocopies
Nomascus leucogenys ENSNLEG000000034863 retrocopies
Otolemur garnettii ENSOGAG00000007478 3 retrocopies
retro_ogar_2635 , retro_ogar_2966, retro_ogar_3086,
Pongo abelii ENSPPYG000000193273 retrocopies
Sarcophilus harrisii ENSSHAG000000171091 retrocopy
Sus scrofa ENSSSCG000000227601 retrocopy
Tupaia belangeri ENSTBEG000000012891 retrocopy
Tarsius syrichta ENSTSYG000000011963 retrocopies
Tursiops truncatus ENSTTRG000000049061 retrocopy
Tursiops truncatus ENSTTRG000000166937 retrocopies



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