RetrogeneDB ID:

retro_mmur_600

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_4142:21085..21388(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RAC2
Ensembl ID:ENSMICG00000017775
Aliases:None
Description:ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:9802]


Retrocopy-Parental alignment summary:






>retro_mmur_600
ATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAA
ATTTCCATCCGAATATGTTCCGACTGTTTTTGACAACTATGCAGTCACAGTTATGAGTGGTGGCGAGCCATATACTCTTG
GACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTGAGTTATCCACAAACAGATGTATTTCTAGTC
TGTTTTTCAGTGGTCTCTCCGTCCTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATA

ORF - retro_mmur_600 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.22 %
Parental protein coverage: 52.6 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPL
MQ.IKCVVVGDGAVGKTCLLISYTTN.FP.EY.PTVFDNY...VM....P..LGL.DTAGQEDYDRLRPL
RetrocopyMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMSGGEPYTLGLFDTAGQEDYDRLRPL
ParentalSYPQTDVFLICFSLVSPASYENVRAKWFPEV
SYPQTDVFL.CFS.VSP.S.ENV..KW.PE.
RetrocopySYPQTDVFLVCFSVVSPSSFENVKEKWVPEI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_600 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_600 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 55 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000098892 retrocopies
Callithrix jacchus ENSCJAG000000021444 retrocopies
Equus caballus ENSECAG000000225702 retrocopies
Erinaceus europaeus ENSEEUG000000095091 retrocopy
Felis catus ENSFCAG000000257762 retrocopies
Gorilla gorilla ENSGGOG000000106122 retrocopies
Loxodonta africana ENSLAFG000000130121 retrocopy
Macropus eugenii ENSMEUG000000122952 retrocopies
Microcebus murinus ENSMICG000000091241 retrocopy
Microcebus murinus ENSMICG00000017775 4 retrocopies
Myotis lucifugus ENSMLUG000000126682 retrocopies
Macaca mulatta ENSMMUG000000188542 retrocopies
Mustela putorius furoENSMPUG000000126822 retrocopies
Nomascus leucogenys ENSNLEG000000147597 retrocopies
Oryctolagus cuniculus ENSOCUG000000161151 retrocopy
Otolemur garnettii ENSOGAG000000041381 retrocopy
Pongo abelii ENSPPYG000000117913 retrocopies
Pteropus vampyrus ENSPVAG000000022812 retrocopies
Sarcophilus harrisii ENSSHAG000000148521 retrocopy
Sus scrofa ENSSSCG000000219444 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000237661 retrocopy
Tursiops truncatus ENSTTRG000000010998 retrocopies



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