RetrogeneDB ID: | retro_sscr_882 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 6:102246328..102246640(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC2 | ||
Ensembl ID: | ENSSSCG00000021944 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:9802] |
Percent Identity: | 53.27 % |
Parental protein coverage: | 54.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLAL-AKEID |
SLVSPAS..N..AKW.PE.....P..T.II.V.TK.D.RDDKD.I.KLKEK....I..P..LA....... | |
Retrocopy | SLVSPASFANMCAKWYPEM*PQSP<NTLIISVETKGDIRDDKDLIGKLKEKSTL-IS*PKALAA>MRSVL |
Parental | SVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRPQKR |
...YLEC.A.TQRGLKT.F...IR.VLC..P....KR | |
Retrocopy | LIMYLECPAFTQRGLKTAFNGPIRTVLCRLPVKRRKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 1 .33 RPM |
SRP014902_testis | 0 .00 RPM | 17 .54 RPM |
SRP018288_heart | 0 .00 RPM | 6 .31 RPM |
SRP018288_kidney | 0 .00 RPM | 10 .64 RPM |
SRP018288_liver | 0 .00 RPM | 11 .03 RPM |
SRP018288_lung | 0 .00 RPM | 156 .61 RPM |
SRP018856_adipose | 0 .00 RPM | 17 .25 RPM |
SRP035408_brain | 0 .00 RPM | 1 .30 RPM |
SRP035408_liver | 0 .00 RPM | 4 .70 RPM |