RetrogeneDB ID: | retro_mmul_1346 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 18:17691781..17692103(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4064 | ||
Ensembl ID: | ENSMMUG00000018854 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 2 [Source:RefSeq peptide;Acc:NP_001248306] |
Percent Identity: | 59.82 % |
Parental protein coverage: | 56.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MQAIKCVVVGDGAVGKTCLLISYT-TNAFPGEYIPTVFDNYSANVMVD-SKPVNLGLWDTAGQE-DYDRL |
MQA..C..V.D..V.KT.LL..YT.T.A.PGE.IP.VFDNYS.NV.VD..KPVNLG.WDT.G.E..YD.L | |
Retrocopy | MQAVTCTMVEDRSVDKTYLLFRYT<TSALPGEEIPIVFDNYSTNVTVD>EKPVNLGSWDTTGRE<EYDGL |
Parental | RPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPST |
R.LSY.QT..F.ICFS.VSPAS.EN.....F.....H.CPS. | |
Retrocopy | RFLSYLQTGEFFICFSFVSPASFENSGILIFTTMFQH<CPSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .67 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .45 RPM |
SRP007412_heart | 0 .00 RPM | 3 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .75 RPM |
SRP007412_liver | 0 .00 RPM | 11 .68 RPM |
SRP007412_testis | 0 .00 RPM | 0 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1925 |
Pan troglodytes | retro_ptro_1288 |
Gorilla gorilla | retro_ggor_1403 |
Pongo abelii | retro_pabe_1591 |
Callithrix jacchus | retro_cjac_1158 |