Parental gene:

RAC2, ENSECAG00000022570

Aliases:None
Description:ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:9802]
Organism:Horse (Equus caballus)
Coordinates:28:34540498..34555217(-)


>ENSECAG00000022570
ATGCAGGCCATCAAGTGTGTGGTGGTGGGAGATGGAGCCGTGGGCAAGACCTGCCTCCTGATCAGCTATACCACCAACGC
CTTCCCGGGAGAGTACATCCCCACCGTGTTCGACAACTACTCGGCCAACGTGATGGTGGACAGCAAGCCAGTGAACCTGG
GGCTGTGGGACACAGCCGGGCAGGAAGACTACGACCGCCTGCGGCCGCTCTCCTACCCACAGACGGACGTCTTCCTCATC
TGCTTCTCCCTCGTCAGCCCCGCCTCCTATGAGAATGTCCGAGCCAAGTGGTACCCCGAGGTGCGGCACCACTGCCCCAG
CACACCCATCATCCTGGTGGGTACCAAGCTGGACCTGCGGGACGACAAGGACACCATCGAGAAGCTGAAAGAGAAGAAGC
TGGCGCCTATCACCTACCCGCAGGGCCTGGCTCTGGCCAAGGAGATCGACTCCGTGAAATACCTGGAGTGCTCAGCCCTC
ACCCAGCGAGGCCTGAAAACCGTCTTTGATGAGGCGATCCGGGCCGTGCTGTGCCCCCAGCCCACGCGGACGCAGAAGCG
CCCCTGCAGCATCCTCTAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 32 .01 RPM
SRP021940_embryo 4 .40 RPM
SRP021940_cerebellum 2 .80 RPM
SRP021940_testis 3 .01 RPM
SRP021940_placental_villous 5 .39 RPM
SRP021940_articular_cartilage 0 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009889 ortholog_one2one 2 retrogenes
retro_amel_1691, retro_amel_647,
Callithrix jacchus ENSCJAG00000002144 ortholog_one2one 4 retrogenes
retro_cjac_1158, retro_cjac_1954, retro_cjac_2917, retro_cjac_847,
Equus caballus ENSECAG00000019180 other_paralog 1 retrogene
retro_ecab_11,
Erinaceus europaeus ENSEEUG00000009509 ortholog_one2one 1 retrogene
retro_eeur_20,
Felis catus ENSFCAG00000025776 ortholog_one2one 2 retrogenes
retro_fcat_1064, retro_fcat_826,
Gorilla gorilla ENSGGOG00000010612 ortholog_one2one 2 retrogenes
retro_ggor_1403, retro_ggor_188,
Loxodonta africana ENSLAFG00000013012 ortholog_one2one 1 retrogene
retro_lafr_117,
Macropus eugenii ENSMEUG00000012295 ortholog_one2one 2 retrogenes
retro_meug_252, retro_meug_552,
Microcebus murinus ENSMICG00000017775 ortholog_one2one 4 retrogenes
retro_mmur_1104, retro_mmur_1557, retro_mmur_20, retro_mmur_600,
Myotis lucifugus ENSMLUG00000012668 ortholog_one2one 2 retrogenes
retro_mluc_326, retro_mluc_860,
Macaca mulatta ENSMMUG00000018854 ortholog_one2one 2 retrogenes
retro_mmul_1346, retro_mmul_210,
Mustela putorius furo ENSMPUG00000012682 ortholog_one2one 2 retrogenes
retro_mputfur_872, retro_mputfur_911,
Nomascus leucogenys ENSNLEG00000014759 ortholog_one2one 7 retrogenes
retro_nleu_1215, retro_nleu_1330, retro_nleu_2094, retro_nleu_2355, retro_nleu_689, retro_nleu_724, retro_nleu_87,
Oryctolagus cuniculus ENSOCUG00000016115 ortholog_one2one 1 retrogene
retro_ocun_43,
Otolemur garnettii ENSOGAG00000004138 ortholog_one2one 1 retrogene
retro_ogar_2977,
Pongo abelii ENSPPYG00000011791 ortholog_one2one 3 retrogenes
retro_pabe_1591, retro_pabe_21, retro_pabe_3818,
Pteropus vampyrus ENSPVAG00000002281 ortholog_one2one 2 retrogenes
retro_pvam_21, retro_pvam_609,
Sarcophilus harrisii ENSSHAG00000014852 ortholog_one2one 1 retrogene
retro_shar_763,
Sus scrofa ENSSSCG00000021944 ortholog_one2one 4 retrogenes
retro_sscr_40, retro_sscr_565, retro_sscr_582, retro_sscr_882,
Ictidomys tridecemlineatus ENSSTOG00000023766 ortholog_one2one 1 retrogene
retro_itri_510,
Tursiops truncatus ENSTTRG00000001099 ortholog_one2one 8 retrogenes
retro_ttru_1029, retro_ttru_1065, retro_ttru_1188, retro_ttru_1599, retro_ttru_1904, retro_ttru_318, retro_ttru_379, retro_ttru_825,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_619 72.48 55.73
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2. retro_ecab_705 87.56 100.00
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Download FASTA sequences of all ENSECAG00000022570 retrocopies