RetrogeneDB ID: | retro_cjac_1158 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 13:62162685..62163141(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC2 | ||
Ensembl ID: | ENSCJAG00000002144 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:9802] |
Percent Identity: | 64.1 % |
Parental protein coverage: | 79.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MQAIKCVVVGDGAVGKTCLLISYT-TNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQE-DYDRLR |
MQAIK..V..D..V.K..LL.SYT...A.PGE..P.VFDNYSAN..VD.KPVNLG.WDTAGQE.DYD.L. | |
Retrocopy | MQAIKYTVGEDRSVDKIYLLFSYT<SSALPGEEVPIVFDNYSANITVDGKPVNLGSWDTAGQE<DYDGLH |
Parental | PLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPI |
.LSY.QTD.FLICFS.VSPAS.EN..AKW.P...HH.C....IIL..TK.D.R.DK..I.KLKEK...PI | |
Retrocopy | VLSYLQTDEFLICFSFVSPASFENTCAKWYPDIHHH<CSNMLIILEVTKRDPRSDKAMIRKLKEKQMTPI |
Parental | TYPQGLALAKEIDSVK |
TYPQGLA.AKE....K | |
Retrocopy | TYPQGLATAKELSALK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 1 .46 RPM |
SRP051959_heart | 0 .02 RPM | 0 .28 RPM |
SRP051959_kidney | 0 .00 RPM | 1 .18 RPM |
SRP051959_liver | 0 .00 RPM | 2 .01 RPM |
SRP051959_lung | 0 .00 RPM | 10 .10 RPM |
SRP051959_lymph_node | 0 .02 RPM | 26 .57 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 0 .15 RPM |
SRP051959_spleen | 0 .00 RPM | 8 .19 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1925 |
Pan troglodytes | retro_ptro_1288 |
Gorilla gorilla | retro_ggor_1403 |
Pongo abelii | retro_pabe_1591 |
Macaca mulatta | retro_mmul_1346 |