RetrogeneDB ID: | retro_mmus_1059 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:109163851..109164309(+) | ||
Located in intron of: | ENSMUSG00000021699 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif4e | ||
Ensembl ID: | ENSMUSG00000028156 | ||
Aliases: | Eif4e, EG668879, Eif4e-ps, If4e, eIF-4E | ||
Description: | eukaryotic translation initiation factor 4E [Source:MGI Symbol;Acc:MGI:95305] |
Percent Identity: | 89.81 % |
Parental protein coverage: | 71.89 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MATVEPETTPTTNPPPAEEEKTESNQEV-ANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTV |
MATVEPETTPTTNP.P.EEEKTESNQEV.ANPE.Y.KHPLQNRWALWFFKNDKSKTWQANLRLIS.FDTV | |
Retrocopy | MATVEPETTPTTNP*PVEEEKTESNQEV<ANPEYYLKHPLQNRWALWFFKNDKSKTWQANLRLIS*FDTV |
Parental | EDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIG |
EDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMW.DE.NK.G..WLITLNKQQRRSDLD.FWLETLL..IG | |
Retrocopy | EDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWKDE-NKQG--WLITLNKQQRRSDLDPFWLETLL*IIG |
Parental | ESFDDYSDDVCGAVVNV |
ESFD..SDDVCGAVVNV | |
Retrocopy | ESFDGQSDDVCGAVVNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 55 .63 RPM |
SRP007412_cerebellum | 0 .13 RPM | 43 .68 RPM |
SRP007412_heart | 0 .00 RPM | 80 .47 RPM |
SRP007412_kidney | 0 .04 RPM | 55 .05 RPM |
SRP007412_liver | 0 .00 RPM | 25 .45 RPM |
SRP007412_testis | 0 .00 RPM | 113 .80 RPM |