RetrogeneDB ID: | retro_mmus_1872 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 19:38387587..38387966(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif4e | ||
Ensembl ID: | ENSMUSG00000028156 | ||
Aliases: | Eif4e, EG668879, Eif4e-ps, If4e, eIF-4E | ||
Description: | eukaryotic translation initiation factor 4E [Source:MGI Symbol;Acc:MGI:95305] |
Percent Identity: | 60.61 % |
Parental protein coverage: | 58.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | ANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY--SLFKDGIEPMWEDEKNKRGGRWLITLN-KQQRRS |
ANL.....FDTVEDF.A.YNHI.L...LMPG.DY....FKD....M.EDEKNK....WLIT.N..Q..R. | |
Retrocopy | ANL*PTCNFDTVEDFGAQYNHI*LPGHLMPGGDYYSTYFKDDNRVM*EDEKNKWRRQWLITFN<QQRWR- |
Parental | DLDRFWLETLLC-LIGESFDDYSDDVCGAVVNVRAK-GDKIAIWTTECENRD-AVTHIGRVY |
DL..FWL.T..C.LIGESFD..SDDVCGAVVNVRAK...KIA.WT.E...R..AV.H.GR.Y | |
Retrocopy | DLNHFWLGTFVC<LIGESFDGNSDDVCGAVVNVRAK<DGKIAMWTLEH*HRE>AVMHTGRGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 55 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .68 RPM |
SRP007412_heart | 0 .00 RPM | 80 .47 RPM |
SRP007412_kidney | 0 .02 RPM | 55 .05 RPM |
SRP007412_liver | 0 .00 RPM | 25 .45 RPM |
SRP007412_testis | 0 .00 RPM | 113 .80 RPM |