RetrogeneDB ID:

retro_mputfur_540

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896918.1:9246759..9247321(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMPUG00000015547
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mputfur_540
AGGACCAAGGGCAAGGAGTGAATCCATCACACCAAGCTGGGCCATCTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGA
GATCTATCTCTTTTCCCTGCCTATTAAGGAATCTGAGATCATTGATTTTTTTCCTGGGGGCATACCTCAAGGATGAGGTT
TTAAAGATTTTGCCTATATAAAACCAGACCTGTGCTGGACAGCAGTCTAGGTTTAAGGCATTTGTTGTCATTGGAGATTA
CAATGGACATCTTGGTCTGGGTGTGAAATACCCCAGGAAGGTAGCCACTGCCATCTGTGGGGCCACCATCCTGGCCAAGC
TTTCCATTATCTCCCTTCCGGGATGCTACTGGAGGAATGAGATTGGCAAGCCTACACCATCCCATGTAAGGTGACCAGTG
ACTGTGGCTCTGGCTGATGTGTCTCATCTTTGCCCTCAGAGGTATTGGCATCACTTTAGTCCCTGTGCACAAGAAGCTCC
TGATGATGGCTGGACTGATGACTGCTATACCTTGGCTGGGGCTGCACTGCCACCCTGGGTTAACTTCGCCAAGACTACGT
TT

ORF - retro_mputfur_540 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.13 %
Parental protein coverage: 69.89 %
Number of stop codons detected: 2
Number of frameshifts detected 6


Retrocopy - Parental Gene Alignment:

ParentalKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFF-LGASLKDEVLKIMPVQKQTRAGQRT
....KE.I..TKLG.LVKDMKIKSLEEIYLFSLPIKESEIIDFF.LGA.LKDEVLKI.P...QT.AGQ..
RetrocopyRTKGKE*IHHTKLGHLVKDMKIKSLEEIYLFSLPIKESEIIDFF>LGAYLKDEVLKILPI*NQTCAGQQS
ParentalRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKP-HTVPCKVTGRCGS-
RFKAFV.IGDYNGH.GLGVK....VATAI.GA.ILAKLSI......YW.N.IGKP..T.PCKVT..CGS.
RetrocopyRFKAFVVIGDYNGHLGLGVKYPRKVATAICGATILAKLSIISLPGCYWRNEIGKP<YTIPCKVTSDCGS<
ParentalVLVRLIPAPRGTGIVSAPVPKKLLMMAGI-DDCYTSAR-GCTATLG-NFAKATF
.L..LI.A.RG.GI...PV.KKLLMMAG..DDCYT.A..GCTATLG.NFAK.TF
RetrocopyWLMCLIFALRGIGITLVPVHKKLLMMAGL<DDCYTLAG<GCTATLG>NFAKTTF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_540 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_540 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 59 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000025491 retrocopy
Bos taurus ENSBTAG000000095357 retrocopies
Loxodonta africana ENSLAFG0000000469611 retrocopies
Macropus eugenii ENSMEUG000000045082 retrocopies
Myotis lucifugus ENSMLUG000000116601 retrocopy
Monodelphis domestica ENSMODG000000160771 retrocopy
Mustela putorius furoENSMPUG00000015547 11 retrocopies
Procavia capensis ENSPCAG000000020902 retrocopies
Sarcophilus harrisii ENSSHAG000000152135 retrocopies
Tursiops truncatus ENSTTRG0000001139312 retrocopies
Vicugna pacos ENSVPAG000000068676 retrocopies



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