RetrogeneDB ID: | retro_vpac_164 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2307:149316..149911(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSVPAG00000006867 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 79.4 % |
Parental protein coverage: | 77.95 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | FFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPV |
F.LGASLKD.VLKIMPVQKQT.A.Q.TRFKAFV.I.D.NGHVGLGVKCSK.VATAIR.AIILA.LSIV.V | |
Retrocopy | FYLGASLKDQVLKIMPVQKQTCADQWTRFKAFVTIEDCNGHVGLGVKCSKRVATAIRRAIILARLSIVSV |
Parental | RRGYWGNKIGK-PHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLG |
.RG...NKI.K.PHT.PCKVTG.C.SV.V.LIPAPRGTGIVS..VP.KLL.MA.IDDC..SA.GCTATLG | |
Retrocopy | QRGC*ENKISK>PHTIPCKVTGCCSSVVVSLIPAPRGTGIVSDSVP*KLLLMASIDDCCASAKGCTATLG |
Parental | NFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
N.AKATFDA.SKTYSYLT.DLWKETVFTK.PYQEF.DHL.KTHTRVS..RT..PAVATT | |
Retrocopy | NLAKATFDAVSKTYSYLTSDLWKETVFTKYPYQEFADHLLKTHTRVSE*RT*VPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |