RetrogeneDB ID: | retro_btau_1656 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:68113369..68113823(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000004170 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSBTAG00000009535 | ||
Aliases: | RPS2, RPS2E | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:O18789] |
Percent Identity: | 89.61 % |
Parental protein coverage: | 51.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KCSKEVATA-IRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGI-VSAPV |
K.SKEVATA...G.IILAKLSIVPVRRGYWGNKI.KPHTVPCKVTGRCGS.LVRLI.APRGTGI..S.PV | |
Retrocopy | KRSKEVATA<LCGTIILAKLSIVPVRRGYWGNKICKPHTVPCKVTGRCGSMLVRLILAPRGTGI<LSTPV |
Parental | PKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTR |
PKKLL.MAGI.DCYTSARGCTATL.NFAKATFDAISKTYSYLTPDLWKETVFTK.PYQEFTDHLVKTHTR | |
Retrocopy | PKKLLLMAGIYDCYTSARGCTATLDNFAKATFDAISKTYSYLTPDLWKETVFTKTPYQEFTDHLVKTHTR |
Parental | VSVQRTQAPAVATT |
VS.QRTQAPAVATT | |
Retrocopy | VSMQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 219 .82 RPM |
ERP005899_muscle | 0 .26 RPM | 2816 .03 RPM |
SRP017611_brain | 0 .00 RPM | 311 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 854 .10 RPM |
SRP017611_liver | 0 .00 RPM | 655 .49 RPM |
SRP030211_testis | 0 .04 RPM | 501 .90 RPM |