RetrogeneDB ID:

retro_ttru_1762

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_90758:11692..12483(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS2
Ensembl ID:ENSTTRG00000011393
Aliases:None
Description:ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]


Retrocopy-Parental alignment summary:






>retro_ttru_1762
GCGGATGACGCTGGTGCTGCGGGAGGGTCCGGAGGCCCTGGGGGCCCTGGAATGGGAGGCCGAGGTGGCTTCCTCAGAGG
CTTCAGCCTAGGGGTCCTGGGCCGGGGCCAAGGCCACGGAGCTCACAGAGGCAAGGCCGAGGACGAGGAGAGGCTCCCTG
TCACCAAGCTGGGCCGCCTGGTCAAGGACATGAAGATCAAGTCCCTGGAGCAGATCTATCTCTTCTCTCTACCCATCAAG
GAATCTGAGATCACTGACTTTTTCTTGGGGGCATCCCTCAAGGATGAGGTTTTGAAGATTATGCCTGTGCAAAAGCAGAC
CTGTGCTGGCCATCGGACCAAGTTCAAGGCATTTGTTGCCACTGGGGATTACAACGGACAATGTGGTTTGGGTGTCAAGT
GCTCTAAGGAGGTAAGCCACTGCCATCCGTGGGGCCATCATTCAAGCCAAGCTCTCCATCGTCCCAGTGCAGCAAGGCTA
CTGGGGGAACAAGATTGGCAAGCCCCATACCATCCCTTGCAAGGTGAATGGCCGCTGTGGCTCTGTGCTGGTGTGCCTCA
TCCCTGCCCCCAGGGGCACGGGCATTGTCTTAGCCCCTGTGCCCAAGAAGCTACTGATAATGGCTGGAATTGACATCGCT
ACATCTCTGCAGGGGCTGCACCACCACCCTGAGCATTTCGCAGCCACTTTTGATGCATTTCAGACTACAGTATCTCACTC
TGATCTCTGGAAAGAAGAACAGGTGTTCACAAAGTCTTCTGTATCATGAATTCACTGACCATCCTGTAAAG

ORF - retro_ttru_1762 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.73 %
Parental protein coverage: 91.55 %
Number of stop codons detected: 0
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalAGGPGGPGGPGGPGMGSRGGFRGGFGSGVRGRGRGRGRGRGRGRGARGGKAEDKEWLPVTKLGRLVKDMK
A...G..GG.GGPG....G...GG.G...RG...G...GRG.G.GA..GKAED.E.LPVTKLGRLVKDMK
RetrocopyADDAGAAGGSGGPG----GPGMGGRGGFLRGFSLGV-LGRGQGHGAHRGKAEDEERLPVTKLGRLVKDMK
ParentalIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCS
IKSLE.IYLFSLPIKESEI.DFFLGASLKDEVLKIMPVQKQT.AG.RT.FKAFVA.GDYNG..GLGVKCS
RetrocopyIKSLEQIYLFSLPIKESEITDFFLGASLKDEVLKIMPVQKQTCAGHRTKFKAFVATGDYNGQCGLGVKCS
ParentalKEV-ATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKL
KEV.ATAIRGAII.AKLSIVPV..GYWGNKIGKPHT.PCKV.GRCGSVLV.LIPAPRGTGIV.APVPKKL
RetrocopyKEV>ATAIRGAIIQAKLSIVPVQQGYWGNKIGKPHTIPCKVNGRCGSVLVCLIPAPRGTGIVLAPVPKKL
ParentalLMMAGIDDC-YTSA-RGCTATLG-NFAKATFDAISKTYSYLTPDLWK-ETVFTKSP-YQEFTDHLVK
L.MAGID...Y.SA.RGCT.TL...FA.ATFDA...T.S....DLWK.E.VFTKS..Y.EFTDH.VK
RetrocopyLIMAGIDIA<YISA<RGCTTTLS<HFA-ATFDAFQTTVSH--SDLWKEEQVFTKSS>YHEFTDHPVK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1762 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1762 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 100 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000025491 retrocopy
Bos taurus ENSBTAG000000095357 retrocopies
Canis familiaris ENSCAFG0000001947219 retrocopies
Cavia porcellus ENSCPOG0000001165111 retrocopies
Loxodonta africana ENSLAFG0000000469611 retrocopies
Myotis lucifugus ENSMLUG000000116601 retrocopy
Monodelphis domestica ENSMODG000000160771 retrocopy
Mustela putorius furoENSMPUG0000001554711 retrocopies
Mus musculus ENSMUSG000000445331 retrocopy
Procavia capensis ENSPCAG000000020902 retrocopies
Rattus norvegicus ENSRNOG0000001417912 retrocopies
Sarcophilus harrisii ENSSHAG000000152135 retrocopies
Tursiops truncatus ENSTTRG00000011393 12 retrocopies
Vicugna pacos ENSVPAG000000068676 retrocopies



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