RetrogeneDB ID: | retro_vpac_114 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_188:340522..341246(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSVPAG00000006867 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 97.13 % |
Parental protein coverage: | 94.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ARGGKAEDK-WLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAG |
ARGGKAEDK.WLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAG | |
Retrocopy | ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAG |
Parental | QRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCG |
QRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPV.RGYWGNKI.KPHTVPCKVTGRCG | |
Retrocopy | QRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVQRGYWGNKICKPHTVPCKVTGRCG |
Parental | SVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKET |
SVLV.LIPAPRGTGIVSAPV.KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKET | |
Retrocopy | SVLVHLIPAPRGTGIVSAPVSKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKET |
Parental | VFTKSPYQ-EFTDHLVKTHTRVSVQR-TQAPAVA |
VFTKSPYQ.EFTDHLVKTHTRVSVQR.TQAPAVA | |
Retrocopy | VFTKSPYQ<EFTDHLVKTHTRVSVQR<TQAPAVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |