RetrogeneDB ID: | retro_btau_1420 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 5:45728878..45729327(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000015395 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSBTAG00000009535 | ||
Aliases: | RPS2, RPS2E | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:O18789] |
Percent Identity: | 88.74 % |
Parental protein coverage: | 51.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKL |
SKEVAT.I.GAIILAKLSIV.VRRGYWGNKIGK.HTVPCKVT..CGSVLV..IPAPRGTGIVSAPVPKKL | |
Retrocopy | SKEVATTICGAIILAKLSIVLVRRGYWGNKIGKTHTVPCKVTSCCGSVLVLFIPAPRGTGIVSAPVPKKL |
Parental | LMMAGIDDCYTSARGCTATLG-NFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSV |
LM.A.IDDCYT.ARGCTATL..NFAKATFDAI.KTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHT.VS. | |
Retrocopy | LMTAAIDDCYTFARGCTATLA<NFAKATFDAIFKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTSVSM |
Parental | QRTQAPAVATT |
QRTQAP.VATT | |
Retrocopy | QRTQAPDVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 219 .82 RPM |
ERP005899_muscle | 0 .11 RPM | 2816 .03 RPM |
SRP017611_brain | 0 .05 RPM | 311 .85 RPM |
SRP017611_kidney | 0 .12 RPM | 854 .10 RPM |
SRP017611_liver | 0 .00 RPM | 655 .49 RPM |
SRP030211_testis | 0 .01 RPM | 501 .90 RPM |