RetrogeneDB ID: | retro_nleu_2086 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397327.1:9450884..9451340(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000003381 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSME2 | ||
Ensembl ID: | ENSNLEG00000015260 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.11 % |
Parental protein coverage: | 59.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILVITWIQHLIPKIEDGNDFGVAIQEKVLERVNAVKTKV |
VPKCGFLPGNEKVLSLLALVKPEVWTLKEK.ILVITWI.HLIPKIEDGND.GVAIQEKVL.RVNAVKTKV | |
Retrocopy | VPKCGFLPGNEKVLSLLALVKPEVWTLKEKFILVITWI*HLIPKIEDGNDLGVAIQEKVLGRVNAVKTKV |
Parental | EAFQTTISKYFSERGDAVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLRAFYAELYHIISSNLEKI |
EAFQTTISKYFSE.GDA.AKAS.ETHVMDY.ALVHER..AAYGELRAMVLDLRAFYAELYHII.SNLEKI | |
Retrocopy | EAFQTTISKYFSEHGDAAAKASEETHVMDYWALVHERGGAAYGELRAMVLDLRAFYAELYHIINSNLEKI |
Parental | VNPKGEEKPSMY |
VNPKG.EKPSMY | |
Retrocopy | VNPKGDEKPSMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007167 | 3 retrocopies | |
Homo sapiens | ENSG00000100911 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016025 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000012473 | 4 retrocopies | |
Mus musculus | ENSMUSG00000079197 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015260 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016584 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005684 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000006196 | 4 retrocopies |