Parental gene: | PSME2, ENSPPYG00000005684 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) activator subunit 2 (PA28 beta) [Source:HGNC Symbol;Acc:9569] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 14:23623983..23627157(-) |
>ENSPPYG00000005684
ATGGCCAAGCCGTGTGGGGTGCGCCTGAGCGGGGAAGCCCGCAAACAGGTGGAAGTCTTCAGGCAGAATCTTTTCCAGGA
GGCGGAGGAATTCCTCTACAGATTCTTGCCACAGAAAATCATATACCTGAATCAGCTCTTGCAAGAGGACTCCCTCAATG
TGGCTGACCTGACTTCCCTCCGGGCCCCACTGGACATCCCCATCCCAGACCCTCCACCCAAGGATGATGAGATGGAAACA
GATAAGCAGGAGAAGAAAGAAGTCCCTAAGTGTGGATTTCTCCCTGGGAATGAGAAAGTCCTGTCCCTGCTTGCCCTGGT
TAAGCCAGAAGTCTGGACTCTCAAAGAGAAATGCATTCTGGTGATTACATGGATCCAACACCTGATCCCCAAGATTGAAG
ATGGAAATGATTTTGGGGTAGCAATCCAGGAAAAGGTGCTGGAGAGGGTGAATGCTGTCAAGACCAAAGTGGAAGCTTTC
CAGACAACCATTTCCAAGTACTTCTCAGAACGTGGGGATGCTGTGGCCAAGGCCTCCAAGGAGACTCATGTAATGGATTA
CCGGGCCTTGGTGCATGAGCGAGATGAGGCAGCCTATGGGGAGCTCAGGGCCATGGTGCTGGACCTGAGGGCCTTCTATG
CTGAGCTTTATCATATCATCAGCAGCAACCTGGAGAAAATTGTCAACCCAAAGGGTGAAGAGAAGCCATCTATGTACTGA
ATGGCCAAGCCGTGTGGGGTGCGCCTGAGCGGGGAAGCCCGCAAACAGGTGGAAGTCTTCAGGCAGAATCTTTTCCAGGA
GGCGGAGGAATTCCTCTACAGATTCTTGCCACAGAAAATCATATACCTGAATCAGCTCTTGCAAGAGGACTCCCTCAATG
TGGCTGACCTGACTTCCCTCCGGGCCCCACTGGACATCCCCATCCCAGACCCTCCACCCAAGGATGATGAGATGGAAACA
GATAAGCAGGAGAAGAAAGAAGTCCCTAAGTGTGGATTTCTCCCTGGGAATGAGAAAGTCCTGTCCCTGCTTGCCCTGGT
TAAGCCAGAAGTCTGGACTCTCAAAGAGAAATGCATTCTGGTGATTACATGGATCCAACACCTGATCCCCAAGATTGAAG
ATGGAAATGATTTTGGGGTAGCAATCCAGGAAAAGGTGCTGGAGAGGGTGAATGCTGTCAAGACCAAAGTGGAAGCTTTC
CAGACAACCATTTCCAAGTACTTCTCAGAACGTGGGGATGCTGTGGCCAAGGCCTCCAAGGAGACTCATGTAATGGATTA
CCGGGCCTTGGTGCATGAGCGAGATGAGGCAGCCTATGGGGAGCTCAGGGCCATGGTGCTGGACCTGAGGGCCTTCTATG
CTGAGCTTTATCATATCATCAGCAGCAACCTGGAGAAAATTGTCAACCCAAAGGGTGAAGAGAAGCCATCTATGTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 21 .07 RPM |
| SRP007412_cerebellum | 21 .77 RPM |
| SRP007412_heart | 18 .15 RPM |
| SRP007412_kidney | 78 .89 RPM |
| SRP007412_liver | 76 .93 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007167 | ortholog_one2many | 3 retrogenes | |
| Homo sapiens | ENSG00000100911 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000016025 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000012473 | ortholog_one2one | 4 retrogenes | |
| Mus musculus | ENSMUSG00000079197 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015260 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016584 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008372 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006196 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1000 | 93.06 | 90.38 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2486 | 88.97 | 56.49 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2512 | 77.37 | 99.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2669 | 91.25 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000005684 retrocopies