RetrogeneDB ID: | retro_ocun_1954 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:111086865..111087429(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005621 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.72 % |
Parental protein coverage: | 97.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HMHVFNHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHVDPSGRLHSHRLLSTEWGLPSVVKSIIGAARTK |
.M....HPW.TV.TAAMQK.PNPMNPSVVGVDVL.RHVDPSG.LHSHRLL.TE.GLPS...S.IGAARTK | |
Retrocopy | NMSLSSHPWATVITAAMQKHPNPMNPSVVGVDVLNRHVDPSGKLHSHRLLNTE*GLPSIMMSLIGAARTK |
Parental | TYVQEHSVVDPVERTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQEAIITVKGVSLSSYLEGLM |
TYVQEHSVVDPV.RT..LK.TN.SFT...SVD.RLIYKP.PQ.PEKT...QEA.ITVKGVSLSSYL.GLM | |
Retrocopy | TYVQEHSVVDPVGRTLKLKYTNTSFTKTISVDKRLIYKPYPQNPEKTAVIQEARITVKGVSLSSYLGGLM |
Parental | ASTISSNANKGREAMEWVIHRLNAEIEELAASARGSIRAPMAAAAFAEK |
AST.SSNAN.G.EA.EW.IH.LNA.IEELAASARGSI.AP..AA.F.EK | |
Retrocopy | ASTTSSNANRGQEATEWLIHKLNAAIEELAASARGSIKAP-TAASFVEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .41 RPM |
SRP017611_liver | 0 .00 RPM | 5 .70 RPM |