RetrogeneDB ID: | retro_ocun_1944 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:86964552..86964871(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005621 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.9 % |
Parental protein coverage: | 54.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | STEWGLPSVVKSIIGAARTKTYVQEHS-VVDPVERTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVL |
..E.GLPS.VKS.IGAARTK.YVQEHS..VD..ERT..LKSTNI....MVSVDERLIYKPHPQDP.KT.L | |
Retrocopy | TSECGLPSIVKSTIGAARTKIYVQEHS>IVDSIERTVGLKSTNI*LPSMVSVDERLIYKPHPQDPCKTTL |
Parental | TQEAIITVKGVSLSSYLEGLMASTISSNANKGREAME |
TQ.AII.VK.V.LSS...GLM.STISS..NKG.EAME | |
Retrocopy | TQGAIIIVKAVRLSSNIRGLMTSTISSHVNKGQEAME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .41 RPM |
SRP017611_liver | 0 .00 RPM | 5 .70 RPM |