RetrogeneDB ID: | retro_ocun_486 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:80832926..80833334(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005621 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.39 % |
Parental protein coverage: | 71.13 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | TEWGLPSVVKSIIGAARTKTYVQEHSVVDPVERTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQ |
T.WGLPS.VKS.IGAARTKT.V.EHS..D.VERTME.KS.NISF.N.VSVDERL.Y.PHPQDPEKT.L.Q | |
Retrocopy | TKWGLPSLVKSLIGAARTKTHV*EHSDLDSVERTME-KSMNISFANIVSVDERLRYEPHPQDPEKTILPQ |
Parental | EAIITVKGVSLSSYLEGLMASTISSNANKGREAMEWVIHRLNAEIEELAASARGSIRAPMAAAAFAEK |
EA..TVKGVSLS....GLM...........R.AMEW.I..L.AE.EELAA.ARG..R.P.AAAAF.EK | |
Retrocopy | EATVTVKGVSLSCFAKGLMVYGVFKH*QRPR-AMEWAIQELSAEPEELAALARGRERVPTAAAAFVEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .41 RPM |
SRP017611_liver | 0 .00 RPM | 5 .70 RPM |