Parental gene:

ENSOCUG00000005621

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018755:421466..426784(-)


>ENSOCUG00000005621
GTAAAATTATTTATTCATATGCATGTTTTTAACCACCCATGGGAAACCGTTACAACGGCTGCAATGCAGAAGTACCCGAA
CCCGATGAACCCGAGCGTGGTTGGAGTGGACGTGCTGGACAGACACGTGGACCCGTCCGGAAGGCTGCACAGCCACAGGC
TGCTGAGCACCGAGTGGGGCCTGCCCTCTGTCGTGAAGTCTATTATTGGTGCAGCAAGAACCAAAACATATGTGCAAGAA
CATTCTGTGGTTGACCCTGTAGAGAGAACCATGGAGCTCAAATCTACCAATATTTCATTTACAAATATGGTTTCAGTAGA
TGAGAGACTCATATACAAGCCACATCCTCAGGACCCAGAAAAAACTGTCTTAACTCAAGAGGCCATAATCACTGTGAAAG
GAGTCAGCCTGAGCAGCTACCTGGAAGGGCTGATGGCAAGTACGATATCCTCCAATGCCAATAAAGGCCGAGAAGCGATG
GAGTGGGTGATCCATAGACTCAACGCCGAGATCGAAGAGCTGGCGGCGTCGGCGAGAGGGAGCATCAGGGCCCCGATGGC
GGCGGCGGCGTTCGCGGAGAAG

Library Parental gene expression (RPM)
SRP017611_liver 5 .70 RPM
SRP017611_kidney 23 .41 RPM
SRP017611_brain 15 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004402 possible_ortholog 3 retrogenes
retro_btau_1006, retro_btau_1346, retro_btau_996,
Canis familiaris ENSCAFG00000012220 possible_ortholog 1 retrogene
retro_cfam_1293,
Callithrix jacchus ENSCJAG00000018905 possible_ortholog 4 retrogenes
retro_cjac_1286, retro_cjac_2921, retro_cjac_3171, retro_cjac_3236,
Cavia porcellus ENSCPOG00000012397 possible_ortholog 4 retrogenes
retro_cpor_1285, retro_cpor_1412, retro_cpor_456, retro_cpor_468,
Dasypus novemcinctus ENSDNOG00000014548 ortholog_one2many 3 retrogenes
retro_dnov_1402, retro_dnov_2032, retro_dnov_2311,
Equus caballus ENSECAG00000000513 possible_ortholog 1 retrogene
retro_ecab_409,
Erinaceus europaeus ENSEEUG00000003697 possible_ortholog 4 retrogenes
retro_eeur_244, retro_eeur_34, retro_eeur_389, retro_eeur_406,
Echinops telfairi ENSETEG00000009651 ortholog_one2one 3 retrogenes
retro_etel_1130, retro_etel_1262, retro_etel_632,
Felis catus ENSFCAG00000031431 possible_ortholog 1 retrogene
retro_fcat_1499,
Homo sapiens ENSG00000101166 possible_ortholog 6 retrogenes
retro_hsap_310, retro_hsap_3166, retro_hsap_3167, retro_hsap_3311, retro_hsap_3783, retro_hsap_4227,
Gorilla gorilla ENSGGOG00000004803 possible_ortholog 5 retrogenes
retro_ggor_1349, retro_ggor_1350, retro_ggor_2544, retro_ggor_2545, retro_ggor_2830,
Loxodonta africana ENSLAFG00000000300 ortholog_one2one 1 retrogene
retro_lafr_700,
Microcebus murinus ENSMICG00000014902 possible_ortholog 12 retrogenes
retro_mmur_101, retro_mmur_1111, retro_mmur_1143, retro_mmur_1299, retro_mmur_1304, retro_mmur_1318, retro_mmur_1391, retro_mmur_1400, retro_mmur_1604, retro_mmur_512, retro_mmur_659, retro_mmur_912,
Myotis lucifugus ENSMLUG00000014907 possible_ortholog 2 retrogenes
retro_mluc_1887, retro_mluc_845,
Macaca mulatta ENSMMUG00000007560 possible_ortholog 4 retrogenes
retro_mmul_1155, retro_mmul_1644, retro_mmul_2123, retro_mmul_539,
Monodelphis domestica ENSMODG00000016608 ortholog_one2many 5 retrogenes
retro_mdom_1596, retro_mdom_1619, retro_mdom_1620, retro_mdom_1655, retro_mdom_405,
Mustela putorius furo ENSMPUG00000007075 possible_ortholog 1 retrogene
retro_mputfur_1586,
Mus musculus ENSMUSG00000016257 ortholog_one2one 2 retrogenes
retro_mmus_2725, retro_mmus_630,
Nomascus leucogenys ENSNLEG00000009579 possible_ortholog 3 retrogenes
retro_nleu_1118, retro_nleu_2497, retro_nleu_2498,
Oryctolagus cuniculus ENSOCUG00000022237 within_species_paralog 1 retrogene
retro_ocun_723,
Otolemur garnettii ENSOGAG00000013382 possible_ortholog 10 retrogenes
retro_ogar_1037, retro_ogar_1650, retro_ogar_2233, retro_ogar_2972, retro_ogar_3009, retro_ogar_3120, retro_ogar_3281, retro_ogar_3378, retro_ogar_3389, retro_ogar_3392,
Ochotona princeps ENSOPRG00000002550 ortholog_one2one 8 retrogenes
retro_opri_1069, retro_opri_1090, retro_opri_141, retro_opri_216, retro_opri_45, retro_opri_663, retro_opri_683, retro_opri_770,
Pongo abelii ENSPPYG00000011182 possible_ortholog 7 retrogenes
retro_pabe_1462, retro_pabe_2631, retro_pabe_2632, retro_pabe_2731, retro_pabe_3089, retro_pabe_3411, retro_pabe_371,
Pan troglodytes ENSPTRG00000013682 possible_ortholog 5 retrogenes
retro_ptro_2160, retro_ptro_2273, retro_ptro_251, retro_ptro_252, retro_ptro_2564,
Pteropus vampyrus ENSPVAG00000005226 possible_ortholog 2 retrogenes
retro_pvam_1075, retro_pvam_1445,
Rattus norvegicus ENSRNOG00000046644 ortholog_one2one 2 retrogenes
retro_rnor_422, retro_rnor_423,
Sorex araneus ENSSARG00000004671 ortholog_one2one 2 retrogenes
retro_sara_282, retro_sara_430,
Sus scrofa ENSSSCG00000007525 possible_ortholog 3 retrogenes
retro_sscr_161, retro_sscr_258, retro_sscr_959,
Tupaia belangeri ENSTBEG00000000493 possible_ortholog 1 retrogene
retro_tbel_1407,
Tarsius syrichta ENSTSYG00000012533 possible_ortholog 2 retrogenes
retro_tsyr_2061, retro_tsyr_250,
Tursiops truncatus ENSTTRG00000008417 possible_ortholog 2 retrogenes
retro_ttru_621, retro_ttru_818,
Vicugna pacos ENSVPAG00000001044 possible_ortholog 2 retrogenes
retro_vpac_224, retro_vpac_359,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_455 76.32 76.80
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2. retro_ocun_486 67.39 71.13
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3. retro_ocun_549 57.14 56.19
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4. retro_ocun_619 73.33 100.00
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5. retro_ocun_775 71.96 54.64
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6. retro_ocun_926 72.93 65.46
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7. retro_ocun_1944 72.90 54.64
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8. retro_ocun_1954 76.72 97.42
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Download FASTA sequences of all ENSOCUG00000005621 retrocopies