RetrogeneDB ID: | retro_ocun_775 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:115915449..115915760(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005621 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.96 % |
Parental protein coverage: | 54.64 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | RTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVL-TQEAIITVKGVSLSSYLEGLMASTISSNANKGR |
RTMELKS.NISFT...SVDERL.Y.PHP..P.KT...T.EA..TVK.VSLSSYLE.L.ASTISSNANK.. | |
Retrocopy | RTMELKSNNISFTYKASVDERLTYSPHP*GPDKTAE<TPEA--TVK*VSLSSYLERLIASTISSNANKDQ |
Parental | EAMEWVIHRLNAEIEELAASARGSIRAPMAAAAFAEK |
.AME..IH...A.IEELAASARG.IRAPMA.AAF.EK | |
Retrocopy | DAME*IIHK*SADIEELAASARGRIRAPMAIAAFVEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .41 RPM |
SRP017611_liver | 0 .00 RPM | 5 .70 RPM |