RetrogeneDB ID: | retro_ocun_549 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:21888700..21889024(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005621 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.14 % |
Parental protein coverage: | 56.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | VKLFIHMHVFNHPW-ETVTTAAMQKYPNPM-NPSVVGVDVLDRHVDPSG-RLHSHRLLSTEWGLPSVVKS |
VK.....HV..HPW.ETV.TAAMQK...P....SV...DVL.R...PS...L.SHR.L..E...PSVVKS | |
Retrocopy | VKIWTLEHVLDHPW<ETVKTAAMQKCSKPQ<SLSVIRGDVLGRYTNPSE<KLYSHRFLHVEGEMPSVVKS |
Parental | IIGAARTKTYVQEHSVVDPVERTMELKSTNISFTNMVSVDER |
..GAA.T.T..QE.S.VDPVE..MELKST..S.T.MV.VDER | |
Retrocopy | LSGAAKTQTHGQEDSIVDPVEKIMELKSTSASSTIMVAVDER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 15 .45 RPM |
SRP017611_kidney | 0 .10 RPM | 23 .41 RPM |
SRP017611_liver | 0 .00 RPM | 5 .70 RPM |