RetrogeneDB ID:

retro_ogar_2258

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873607.1:1905254..1905723(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000028830
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_2258
CATCTTATGTTAACCTGCATACCACTGGTCTGTATAACACAGATTCTGTGTTATGCAGACATCGCCATCCCATGTAACAA
CAAGGGAGCTCACTCAGTAGATCTGATGTGGTGGATGCTGGCCCAGGAAGTTCTCCACATGCATGGGACCACCTCCCATG
AACATCCATGGGAGATGAAGCATGATCTCTACTTCTATAGAGATCTTGAAGAGATTGAAAAGGAAGATCAGGCTGCTACT
GAGAAAGTTGTGACCAAGGAGGAATTTCAGGGAGAAAGAACTGCTCCCAGTCCTGAATTTACTGCTACTCAACCAAAAGT
TCCAGACTGATCAGAGGCTGCAAGTGCCCTCTGTGCCTGTTTAGCAGAACCCCACTGAATACACGAGTGCCCAGCCTGCC
ACTGATGACTGGTCTGCAGCTCCCACTGCTCAGGGCACTGAATGGGTAGGAACAACCACTGAGTGGTCT

ORF - retro_ogar_2258 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.12 %
Parental protein coverage: 58.96 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalHQPLTPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP
H..LT.....C.T...L.Y.DIAIPCNNKGAHSV.LMWWMLA.EVL.M.GT.S.EHPWE...DLYFYRD.
RetrocopyHLMLTCIPLVCITQI-LCYADIAIPCNNKGAHSVDLMWWMLAQEVLHMHGTTSHEHPWEMKHDLYFYRDL
ParentalEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSE-GVQVP-SVPIQQFPTEDWSAQPATED
EEIEKE.QAA.EK.VTKEEFQGE.TAP.PEFTATQP.V.D.SE.G...P.SVP..Q.PTE..SAQPAT.D
RetrocopyEEIEKEDQAATEKVVTKEEFQGERTAPSPEFTATQPKVPD*SE<GCKCP<SVPV*QNPTEYTSAQPATDD
ParentalWSAAPTAQATEWVGTTTEWS
WSAAPTAQ.TEWVGTTTEWS
RetrocopyWSAAPTAQGTEWVGTTTEWS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2258 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 348 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000041831 retrocopy
Ailuropoda melanoleuca ENSAMEG0000000896213 retrocopies
Bos taurus ENSBTAG0000000975719 retrocopies
Canis familiaris ENSCAFG0000000510127 retrocopies
Dasypus novemcinctus ENSDNOG0000000404827 retrocopies
Dipodomys ordii ENSDORG000000082671 retrocopy
Equus caballus ENSECAG000000130625 retrocopies
Echinops telfairi ENSETEG000000181604 retrocopies
Felis catus ENSFCAG0000000273922 retrocopies
Loxodonta africana ENSLAFG000000320095 retrocopies
Macropus eugenii ENSMEUG0000000816914 retrocopies
Microcebus murinus ENSMICG0000000451832 retrocopies
Monodelphis domestica ENSMODG000000109672 retrocopies
Mustela putorius furoENSMPUG0000000246321 retrocopies
Mus musculus ENSMUSG000000325181 retrocopy
Otolemur garnettii ENSOGAG00000028830 8 retrocopies
Ochotona princeps ENSOPRG0000000450516 retrocopies
Pteropus vampyrus ENSPVAG0000000779419 retrocopies
Rattus norvegicus ENSRNOG0000001864527 retrocopies
Sarcophilus harrisii ENSSHAG000000068962 retrocopies
Tupaia belangeri ENSTBEG0000001594654 retrocopies
Tursiops truncatus ENSTTRG0000001449624 retrocopies
Vicugna pacos ENSVPAG000000123074 retrocopies



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