Parental gene:

RAB5A, ENSPPYG00000014074

Aliases:None
Description:RAB5A, member RAS oncogene family [Source:HGNC Symbol;Acc:9783]
Organism:Orangutan (Pongo abelii)
Coordinates:3:127486704..127525210(-)


>ENSPPYG00000014074
ATGGCTAGTCGAGGCGCAACAAGACCCAACGGGCCAAATACTGGAAATAAAATATGCCAGTTCAAACTAGTACTTCTGGG
AGAGTCCGCTGTTGGCAAATCAAGCCTAGTGCTTCGTTTTGTGAAAGGCCAATTTCATGAATTTCAAGAGAGTACCATTG
GGGCTGCTTTTCTAACCCAAACTGTATGTCTTGATGACACTACAGTAAAGTTTGAAATATGGGATACAGCTGGTCAAGAA
CGATACCATAGCCTAGCACCAATGTACTACAGAGGAGCACAAGCAGCCATAGTTGTATATGATATCACAAATGAGGAGTC
CTTTGCAAGAGCAAAAAATTGGGTTAAAGAACTTCAGAGGCAAGCAAGTCCTAACATTGTAATAGCTTTATCAGGAAACA
AGGCCGACCTAGCAAATAAAAGAGCAGTAGATTTCCAGGAAGCACAGTCCTATGCAGATGACAATAGTTTATTATTCATG
GAGACATCCGCTAAAACATCAATGAATGTAAATGAAATATTCATGGCAATAGCTAAAAAATTGCCAAAGAATGAACCACA
AAATCCAGGAGCAAATTCTGCCAGAGGAAGAGGAGTGGACCTTACCGAACCCACACAACCAACCAGGAGTCAGTGTTGTA
GTAACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 22 .45 RPM
SRP007412_cerebellum 25 .54 RPM
SRP007412_heart 12 .52 RPM
SRP007412_kidney 14 .15 RPM
SRP007412_liver 17 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000954 ortholog_one2one 1 retrogene
retro_amel_958,
Bos taurus ENSBTAG00000046385 ortholog_one2one 1 retrogene
retro_btau_300,
Callithrix jacchus ENSCJAG00000003731 ortholog_one2many 1 retrogene
retro_cjac_3268,
Cavia porcellus ENSCPOG00000005322 ortholog_one2one 2 retrogenes
retro_cpor_1213, retro_cpor_219,
Dipodomys ordii ENSDORG00000012429 ortholog_one2one 1 retrogene
retro_dord_288,
Felis catus ENSFCAG00000004455 ortholog_one2one 2 retrogenes
retro_fcat_1349, retro_fcat_984,
Homo sapiens ENSG00000144566 ortholog_one2one 1 retrogene
retro_hsap_1074,
Gorilla gorilla ENSGGOG00000015981 ortholog_one2one 1 retrogene
retro_ggor_848,
Loxodonta africana ENSLAFG00000008321 ortholog_one2one 1 retrogene
retro_lafr_267,
Macaca mulatta ENSMMUG00000006992 ortholog_one2many 2 retrogenes
retro_mmul_227, retro_mmul_839,
Monodelphis domestica ENSMODG00000014793 ortholog_one2one 2 retrogenes
retro_mdom_1219, retro_mdom_1993,
Mus musculus ENSMUSG00000017831 ortholog_one2one 1 retrogene
retro_mmus_1645,
Nomascus leucogenys ENSNLEG00000003434 ortholog_one2one 1 retrogene
retro_nleu_2466,
Oryctolagus cuniculus ENSOCUG00000012200 ortholog_one2one 1 retrogene
retro_ocun_1034,
Pongo abelii ENSPPYG00000008398 within_species_paralog 1 retrogene
retro_pabe_2664,
Pan troglodytes ENSPTRG00000014682 ortholog_one2one 1 retrogene
retro_ptro_731,
Ictidomys tridecemlineatus ENSSTOG00000026229 ortholog_one2one 1 retrogene
retro_itri_398,
Tarsius syrichta ENSTSYG00000007642 ortholog_one2one 3 retrogenes
retro_tsyr_1544, retro_tsyr_315, retro_tsyr_946,
Tursiops truncatus ENSTTRG00000001374 ortholog_one2one 1 retrogene
retro_ttru_949,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_894 86.75 76.74
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2. retro_pabe_3094 86.78 100.00
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Download FASTA sequences of all ENSPPYG00000014074 retrocopies