RetrogeneDB ID: | retro_pabe_3662 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:76434606..76435345(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 80.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | MEGVEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQ-KMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
ME.V.EKKKV..V.ETLKKK..NFA.LKI..LRKKF.Q.KML.K.RRKLIYE.AKHY.KEY.Q.YRTEI. | |
Retrocopy | MEDVKEKKKVSVVSETLKKK*SNFAKLKINHLRKKFTQ<KML*KTRRKLIYETAKHYQKEYTQVYRTEIQ |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
MARMARK.G.FYVPAEPKLAFVIRIR..NG..PKV.KVLQLL.LR.IFN.TFVKLNKASINML.IVEPYI | |
Retrocopy | MARMARKTGKFYVPAEPKLAFVIRIRCVNGMRPKV*KVLQLLCLRRIFNRTFVKLNKASINMLMIVEPYI |
Parental | AWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP |
AW.YPNLKSVNELIY.R.YGKIN.K.IALTDN.L.A.SLGKYGIICM.DLIHEIYTV.K.FKEANNFLWP | |
Retrocopy | AWEYPNLKSVNELIYQRAYGKINEKQIALTDNTLTA*SLGKYGIICMGDLIHEIYTVEKCFKEANNFLWP |
Parental | FKLSSPRGGMKKKTTHFVEGGDAGNR-EDQINRLIRRMN |
FKLSSP.GGMKKKTT.FVEG.DAGNR.ED.IN..IRRMN | |
Retrocopy | FKLSSP*GGMKKKTTYFVEGEDAGNR<ED*INSFIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4718 |