RetrogeneDB ID: | retro_pabe_3714 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:148409056..148409773(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSPPYG00000016619 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7-like 1 [Source:RefSeq peptide;Acc:NP_001124607] |
Percent Identity: | 83.82 % |
Parental protein coverage: | 95.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QRKIPLVPENLLKKRKAYQALKATQAKQALLAKKEQRKGKGLRFKRLESFLHDSWRQKRDMVRLRRLEMK |
QRKIPLVPENLLKKRK.YQALKATQAKQALLAK.EQRKGKG.RFK.LESFLHDSW.QK.D.V.LR.LE.K | |
Retrocopy | QRKIPLVPENLLKKRKVYQALKATQAKQALLAK-EQRKGKGPRFKQLESFLHDSWWQKCDKVHLRQLEVK |
Parental | PHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNL |
.H.LELPDKHSLA.VV.IE.IDG.SLLVQ.TIARL.LKKIFSG.F.KVTPQNLKML.IVE.YVT.GFPNL | |
Retrocopy | AHDLELPDKHSLALVVCIEKIDGMSLLVQ-TIARLHLKKIFSGAFIKVTPQNLKMLHIVETYVT*GFPNL |
Parental | KSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVAR |
KSV.EL.LK.GQ.KVKNKTIPLTDNTVIE.HLGK.GVICLEDLI.EIAFPGKHFQEI.WFL..FHL.VA. | |
Retrocopy | KSVWELVLKCGQSKVKNKTIPLTDNTVIEKHLGKVGVICLEDLIYEIAFPGKHFQEILWFLCSFHLTVAH |
Parental | HATKNRVGFLKEMGTPGYRGERINQLIRQLN |
HATKNRVGFL.EMGTPG.RGE.INQLI.QLN | |
Retrocopy | HATKNRVGFLNEMGTPGCRGECINQLICQLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 86 .53 RPM |
SRP007412_cerebellum | 0 .00 RPM | 71 .74 RPM |
SRP007412_heart | 0 .00 RPM | 35 .79 RPM |
SRP007412_kidney | 0 .03 RPM | 77 .63 RPM |
SRP007412_liver | 0 .00 RPM | 51 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4770 |
Gorilla gorilla | retro_ggor_2973 |