RetrogeneDB ID: | retro_pabe_436 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:118614592..118615300(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 75.85 % |
Parental protein coverage: | 93.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KKKRRNFAELKIKRLRKKFAQ---KMLRKARRKLIYEKAKHY---HKEYRQMYRTEIRMARMARKAGNFY |
K..RR.F...........FA....K.LR.........KA.......K..RQMYRTEI..AR.ARKAGNFY | |
Retrocopy | KRRRRRFLLCQKPFRKRNFAELKIKYLRNKFAQKMLQKARRKLICEKANRQMYRTEI*IARGARKAGNFY |
Parental | VPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNE |
V.AEPKLAFVIRIRGINGV.PKV.KVLQLLRL.QIFNGTFVKLN.AS.NMLRIVEPYIAWGYPNLKSVNE | |
Retrocopy | VRAEPKLAFVIRIRGINGVNPKVQKVLQLLRLCQIFNGTFVKLNRASVNMLRIVEPYIAWGYPNLKSVNE |
Parental | LIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKK |
L.YKRGYGKINKKRIALTDNALIA.SLGKYGIICMEDLI.EIYTVGK..K..NNF.WPFKLS.PRGGMKK | |
Retrocopy | LVYKRGYGKINKKRIALTDNALIA*SLGKYGIICMEDLIQEIYTVGKVCKKTNNFPWPFKLSYPRGGMKK |
Parental | KTTHFVEGGDAGNREDQINRLIRRMN |
K.THFVEGGDAGNREDQI.RLIRRMN | |
Retrocopy | KATHFVEGGDAGNREDQIDRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .36 RPM | 236 .51 RPM |
SRP007412_heart | 0 .06 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .09 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_203 |