Parental gene:

RPL7L1, ENSPPYG00000016619

Aliases:None
Description:60S ribosomal protein L7-like 1 [Source:RefSeq peptide;Acc:NP_001124607]
Organism:Orangutan (Pongo abelii)
Coordinates:6:42957741..42967014(+)


>ENSPPYG00000016619
ATGTTATCTCTGATCTCAATTTTCTGCATCAGGCAAAGAAAAATCCCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAA
GGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAGGCACTTTTGGCAAAGAAGGAGCAGAGGAAAGGAAAAGGGCTCA
GGTTTAAGCGACTGGAATCATTCCTACATGATTCCTGGCGGCAGAAACGTGACATGGTGCGTCTCAGACGACTAGAAATG
AAACCTCATGCCTTGGAATTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCGAAAGGATTGATGGCGTGAGTTT
ACTGGTGCAGAGAACCATTGCAAGACTTCGCCTAAAGAAAATTTTTAGTGGTGTCTTTGTAAAAGTCACCCCCCAGAATC
TAAAAATGCTGCGTATAGTGGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCGAGAACTCATTTTGAAA
CGTGGACAAGCCAAGGTGAAGAATAAGACCATCCCTCTGACAGACAACACAGTGATTGAGGAGCACCTGGGGAAGTTTGG
CGTCATTTGCTTGGAAGACCTCATTCATGAAATTGCCTTTCCAGGGAAGCATTTCCAGGAGATCTCATGGTTCTTGCGCC
CTTTCCACCTCTCAGTGGCCCGTCATGCTACCAAAAATAGAGTGGGCTTCCTCAAGGAGATGGGCACACCTGGCTATCGG
GGTGAACGCATCAATCAGCTCATCCGCCAGCTGAACTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 86 .53 RPM
SRP007412_cerebellum 71 .74 RPM
SRP007412_heart 35 .79 RPM
SRP007412_kidney 77 .63 RPM
SRP007412_liver 51 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012791 ortholog_one2one 2 retrogenes
retro_amel_1260, retro_amel_243,
Bos taurus ENSBTAG00000018478 ortholog_one2one 2 retrogenes
retro_btau_588, retro_btau_816,
Canis familiaris ENSCAFG00000001728 ortholog_one2many 4 retrogenes
retro_cfam_1180, retro_cfam_1464, retro_cfam_1638, retro_cfam_330,
Choloepus hoffmanni ENSCHOG00000000306 ortholog_one2one 4 retrogenes
retro_chof_1168, retro_chof_1404, retro_chof_388, retro_chof_478,
Cavia porcellus ENSCPOG00000021189 possible_ortholog 2 retrogenes
retro_cpor_1134, retro_cpor_653,
Dasypus novemcinctus ENSDNOG00000013485 ortholog_one2one 1 retrogene
retro_dnov_689,
Equus caballus ENSECAG00000003113 ortholog_one2one 1 retrogene
retro_ecab_998,
Erinaceus europaeus ENSEEUG00000010431 ortholog_one2one 1 retrogene
retro_eeur_90,
Echinops telfairi ENSETEG00000002419 ortholog_one2one 3 retrogenes
retro_etel_1151, retro_etel_1823, retro_etel_542,
Felis catus ENSFCAG00000009707 ortholog_one2one 1 retrogene
retro_fcat_143,
Gorilla gorilla ENSGGOG00000009958 ortholog_one2many 15 retrogenes
retro_ggor_1009, retro_ggor_1013, retro_ggor_1253, retro_ggor_1261, retro_ggor_1904, retro_ggor_2099, retro_ggor_2108, retro_ggor_2113, retro_ggor_2162, retro_ggor_2282, retro_ggor_2457, retro_ggor_2524, retro_ggor_2591, retro_ggor_2659, retro_ggor_2973,
Macaca mulatta ENSMMUG00000021313 ortholog_one2many 1 retrogene
retro_mmul_11,
Monodelphis domestica ENSMODG00000019028 ortholog_one2one 1 retrogene
retro_mdom_1708,
Mustela putorius furo ENSMPUG00000013296 ortholog_one2one 1 retrogene
retro_mputfur_1577,
Mus musculus ENSMUSG00000063888 possible_ortholog 4 retrogenes
retro_mmus_2359, retro_mmus_3172, retro_mmus_3626, retro_mmus_777,
Otolemur garnettii ENSOGAG00000012671 possible_ortholog 3 retrogenes
retro_ogar_1380, retro_ogar_3358, retro_ogar_3428,
Pongo abelii ENSPPYG00000018671 within_species_paralog 50 retrogenes
retro_pabe_1025, retro_pabe_1061, retro_pabe_1087, retro_pabe_1326, retro_pabe_1454, retro_pabe_1520, retro_pabe_1642, retro_pabe_1677, retro_pabe_1908, retro_pabe_1998, retro_pabe_2004, retro_pabe_2118, retro_pabe_2197, retro_pabe_2348, retro_pabe_2656, retro_pabe_2690, retro_pabe_2762, retro_pabe_2796, retro_pabe_2807, retro_pabe_2808, retro_pabe_2856, retro_pabe_2886, retro_pabe_2936, retro_pabe_2946, retro_pabe_307, retro_pabe_3085, retro_pabe_3117, retro_pabe_3139, retro_pabe_3191, retro_pabe_3414, retro_pabe_3468, retro_pabe_3506, retro_pabe_352, retro_pabe_3622, retro_pabe_3651, retro_pabe_3662, retro_pabe_3669, retro_pabe_3675, retro_pabe_436, retro_pabe_497, retro_pabe_514, retro_pabe_551, retro_pabe_628, retro_pabe_655, retro_pabe_826, retro_pabe_844, retro_pabe_859, retro_pabe_865, retro_pabe_867, retro_pabe_933,
Pteropus vampyrus ENSPVAG00000008696 ortholog_one2one 3 retrogenes
retro_pvam_1179, retro_pvam_1482, retro_pvam_975,
Rattus norvegicus ENSRNOG00000016269 possible_ortholog 1 retrogene
retro_rnor_2795,
Sorex araneus ENSSARG00000005286 ortholog_one2one 2 retrogenes
retro_sara_100, retro_sara_211,
Sarcophilus harrisii ENSSHAG00000011219 ortholog_one2one 1 retrogene
retro_shar_216,
Sus scrofa ENSSSCG00000026472 ortholog_one2one 3 retrogenes
retro_sscr_198, retro_sscr_756, retro_sscr_807,
Ictidomys tridecemlineatus ENSSTOG00000009841 possible_ortholog 2 retrogenes
retro_itri_1233, retro_itri_417,
Tursiops truncatus ENSTTRG00000006971 ortholog_one2one 6 retrogenes
retro_ttru_1194, retro_ttru_171, retro_ttru_361, retro_ttru_498, retro_ttru_528, retro_ttru_915,
Vicugna pacos ENSVPAG00000008894 ortholog_one2one 2 retrogenes
retro_vpac_386, retro_vpac_584,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1064 80.91 95.63
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2. retro_pabe_1069 82.46 90.08
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3. retro_pabe_1315 85.15 79.76
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4. retro_pabe_1341 94.61 95.63
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5. retro_pabe_1370 90.04 95.63
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6. retro_pabe_1379 89.51 63.49
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7. retro_pabe_1457 87.72 90.48
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8. retro_pabe_2078 82.86 55.16
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9. retro_pabe_2154 88.74 57.94
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10. retro_pabe_2354 74.05 51.59
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11. retro_pabe_2527 79.41 53.17
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12. retro_pabe_2543 88.80 95.63
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13. retro_pabe_2598 79.41 53.17
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14. retro_pabe_2609 84.02 96.03
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15. retro_pabe_2644 93.98 52.78
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16. retro_pabe_2988 88.02 95.63
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17. retro_pabe_3053 81.63 95.63
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18. retro_pabe_3259 85.54 95.63
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19. retro_pabe_3410 68.22 90.48
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20. retro_pabe_3714 83.82 95.63
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21. retro_pabe_3753 90.51 53.97
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Download FASTA sequences of all ENSPPYG00000016619 retrocopies