RetrogeneDB ID: | retro_ptro_1887 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 3:48858022..48858568(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSPTRG00000010012 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 91.76 % |
Parental protein coverage: | 98.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRC |
MV.YSL.PENPTKSCKSRGSNLRVHFKNTRETAQAI..MH.RKATKYLKDVTLQKQCVPFR.YNG.VGRC | |
Retrocopy | MVHYSLHPENPTKSCKSRGSNLRVHFKNTRETAQAIMDMHVRKATKYLKDVTLQKQCVPFRHYNGRVGRC |
Parental | AQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYM |
.QAKQWGWTQ..WPKKSAEFLLHMLKNAESNAE.KG.DVDSLVIE.IQVNKAPKMRRRTYRAHGRINPYM | |
Retrocopy | TQAKQWGWTQD*WPKKSAEFLLHMLKNAESNAEFKGFDVDSLVIEDIQVNKAPKMRRRTYRAHGRINPYM |
Parental | SSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMA |
SSPCHI.M.LTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMA | |
Retrocopy | SSPCHIKMVLTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 167 .43 RPM |
SRP007412_cerebellum | 0 .04 RPM | 232 .84 RPM |
SRP007412_heart | 0 .06 RPM | 106 .24 RPM |
SRP007412_kidney | 0 .08 RPM | 275 .85 RPM |
SRP007412_liver | 0 .00 RPM | 136 .70 RPM |
SRP007412_testis | 0 .11 RPM | 130 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2786 |
Pongo abelii | retro_pabe_2231 |
Macaca mulatta | retro_mmul_1441 |