Parental gene:

RPL17, ENSLAFG00000005569

Aliases:None
Description:None
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_4:50082995..50085957(+)


>ENSLAFG00000005569
ATGGTTCGCTACTCACTTGACCCAGAAAACCCCACAAAATCATGCAAATCAAGAGGTTCAAATCTTCGGGTCCATTTTAA
GAACACCCGAGAAACTGCCCAGGCCATCAAGGGTATGCATATCAGAAAAGCCACCAAGTATCTGAAAGATGTCACTTTGC
AGAAGCAGTGTGTGCCGTTCCGGCGCTATAATGGTGGAGTTGGTAGATGTGCCCAGGCCAAGCAGTGGGGTTGGACACAG
GGACGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTCCACATGCTTAAAAATGCAGAGAGTAATGCTGAACTTAAGGGTTT
AGATGTAGATTCTCTGGTCATTGAGCACATCCAGGTGAACAAAGCCCCCAAGATGCGCCGCCGTACTTACAGAGCTCATG
GTCGAATTAACCCATATATGAGCTCCCCTTGCCACATTGAGATGATCCTTACCGAAAAGGAACAGATTGTTCCTAAACCA
GAAGAGGAGGTTGCACAGAAGAAAAAGATATCCCAGAAGAAGCTGAAGAAACAAAAACTTATGGCTCGAGAGTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 ortholog_one2many 40 retrogenes
Canis familiaris ENSCAFG00000019044 ortholog_one2many 7 retrogenes
Callithrix jacchus ENSCJAG00000004779 ortholog_one2many 4 retrogenes
Echinops telfairi ENSETEG00000011322 possible_ortholog 10 retrogenes
Felis catus ENSFCAG00000011342 ortholog_one2one 43 retrogenes
Homo sapiens ENSG00000215472 possible_ortholog 1 retrogene
Homo sapiens ENSG00000265681 ortholog_one2one 33 retrogenes
Gorilla gorilla ENSGGOG00000026697 ortholog_one2many 1 retrogene
Latimeria chalumnae ENSLACG00000008835 ortholog_one2one 1 retrogene
Macropus eugenii ENSMEUG00000016709 possible_ortholog 26 retrogenes
Macaca mulatta ENSMMUG00000018837 possible_ortholog 26 retrogenes
Mustela putorius furo ENSMPUG00000000801 ortholog_one2many 7 retrogenes
Pongo abelii ENSPPYG00000009151 possible_ortholog 43 retrogenes
Pan troglodytes ENSPTRG00000010012 ortholog_one2one 51 retrogenes
Sus scrofa ENSSSCG00000029642 ortholog_one2one 30 retrogenes
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lafr_177 74.63 71.74
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2. retro_lafr_186 74.59 100.00
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3. retro_lafr_207 74.32 96.74
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4. retro_lafr_213 92.93 100.00
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5. retro_lafr_256 63.87 83.70
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6. retro_lafr_293 83.14 92.93
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7. retro_lafr_354 79.01 87.50
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8. retro_lafr_721 97.30 60.33
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9. retro_lafr_731 69.89 99.46
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10. retro_lafr_773 78.33 96.74
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11. retro_lafr_860 71.93 61.41
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12. retro_lafr_933 63.37 91.30
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13. retro_lafr_1001 96.09 96.74
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14. retro_lafr_1036 75.27 96.74
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15. retro_lafr_1060 96.22 100.00
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16. retro_lafr_1130 72.38 57.07
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Download FASTA sequences of all ENSLAFG00000005569 retrocopies