Parental gene:

ENSCAFG00000019044

Aliases:RPL17, RPL17L
Description:None
Organism:Dog (Canis familiaris)
Coordinates:7:79264739..79268083(+)


>ENSCAFG00000019044
ATGGTTCGCTACTCGCTGGACCCAGAAAACCCTACAAAATCATGCAAGTCGAGAGGTTCAAATCTTCGTGTTCACTTTAA
GAACACACGTGAAACTGCCCAGGCCATCAAGGGTATGCATATTCGAAAAGCCACCAAGTATCTGAAAGATGTCACTTTGC
AGAAGCAGTGTGTCCCATTCCGTCGCTACAATGGTGGAGTTGGTAGGTGTGCGCAGGCCAAACAGTGGGGCTGGACACAG
GGTCGGTGGCCCAAGAAGAGTGCTGAGTTTTTACTGCACATGCTTAAAAATGCGGAGAGTAATGCTGAACTTAAGGGTTT
AGATGTAGATTCTCTGGTCATTGAGCACATCCAGGTGAATAAAGCCCCCAAGATGCGACGTAGAACCTACAGGGCTCATG
GCCGGATTAATCCATACATGAGCTCTCCCTGCCACATTGAGATGATTCTTACTGAAAAAGAGCAGATTGTTCCTAAACCA
GAAGAGGAGGTTGCACAGAAGAAAAAGATATCCCAGAAGAAACTGAAGAAACAAAAACTTATGGCCCGGGAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 80 .42 RPM
SRP017611_kidney 763 .59 RPM
SRP017611_liver 84 .55 RPM
SRP012049_cerebellum 261 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 ortholog_one2many 40 retrogenes
Choloepus hoffmanni ENSCHOG00000007872 possible_ortholog 50 retrogenes
Callithrix jacchus ENSCJAG00000004779 possible_ortholog 4 retrogenes
Echinops telfairi ENSETEG00000011322 possible_ortholog 10 retrogenes
Felis catus ENSFCAG00000011342 ortholog_one2many 43 retrogenes
Homo sapiens ENSG00000215472 possible_ortholog 1 retrogene
Homo sapiens ENSG00000265681 possible_ortholog 33 retrogenes
Gorilla gorilla ENSGGOG00000026697 possible_ortholog 1 retrogene
Latimeria chalumnae ENSLACG00000008835 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000005569 ortholog_one2many 16 retrogenes
Macropus eugenii ENSMEUG00000016709 possible_ortholog 26 retrogenes
Microcebus murinus ENSMICG00000017102 possible_ortholog 14 retrogenes
Macaca mulatta ENSMMUG00000018837 possible_ortholog 26 retrogenes
Mustela putorius furo ENSMPUG00000000801 ortholog_many2many 7 retrogenes
Procavia capensis ENSPCAG00000003103 possible_ortholog 8 retrogenes
Pongo abelii ENSPPYG00000009151 possible_ortholog 43 retrogenes
Pan troglodytes ENSPTRG00000010012 possible_ortholog 51 retrogenes
Pteropus vampyrus ENSPVAG00000001969 possible_ortholog 76 retrogenes
Sarcophilus harrisii ENSSHAG00000003060 possible_ortholog 14 retrogenes
Sus scrofa ENSSSCG00000029642 ortholog_one2many 30 retrogenes
Tarsius syrichta ENSTSYG00000007402 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000005797 possible_ortholog 31 retrogenes
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_2 91.30 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cfam_34 98.37 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cfam_102 96.20 99.46
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_cfam_171 98.91 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_cfam_175 76.97 96.74
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_cfam_189 95.65 100.00
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_cfam_239 98.91 100.00
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSCAFG00000019044 retrocopies