RetrogeneDB ID: | retro_lafr_933 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_5:13032608..13033120(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSLAFG00000005569 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.37 % |
Parental protein coverage: | 91.3 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MVRYSLDPENPTKSCKSRGS-NLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGR |
MVRYS.D.E.P..SCK.RGS.NL.VHFKN..E..QAIKG.H..KAT.YLK.VTL.KQ...F...NGGVGR | |
Retrocopy | MVRYSCDSETPSESCKLRGS>NLQVHFKNLCEVTQAIKGVHT*KATTYLKNVTLLKQ*ALFQCSNGGVGR |
Parental | CAQAKQWGWTQGRW--PKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRIN |
.AQAKQWGW.......PK....F..H.....ES.A.LKGLD.DSL..E.I.VNKAP.MRR.T.RAHG.IN | |
Retrocopy | RAQAKQWGWVHAGLVAPKDG*IFAAHA*TCRESSAQLKGLDADSLANELIRVNKAPGMRRPT*RAHGEIN |
Parental | PYMSSPCHIEMILTEKEQIVPKPEE-EVAQKK |
P..SSPC.IEMIL.EKEQIVPK.EE....QKK | |
Retrocopy | PFLSSPCRIEMILKEKEQIVPKLEE>KIFQKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |