RetrogeneDB ID:

retro_pvam_343

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_2655:101121..101388(-)
Located in intron of:ENSPVAG00000014426
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL37A
Ensembl ID:ENSPVAG00000006102
Aliases:None
Description:ribosomal protein L37a [Source:HGNC Symbol;Acc:10348]


Retrocopy-Parental alignment summary:






>retro_pvam_343
GCTAAATACATCAAGAAGGTCGTAGTCATTGGTAAATACAAGACCCATTATGGCACCTCCCTCAGGAAAATAGTGAAGAG
AATAGAAATCAGCCAGCATGTCAAATACACTTGCTCCTGTGGCAAAACCAAGATGAAGAGACAAGCTGTGGGGATCTGTC
ACTGTAGTTCCTGCATGAAAATGGTAGCTGGTGGTGCCTGGACCTACACCACCACTTCTGCCCTAACAGTAAAGTCTGCC
ATCAGAAGACTGAAGGAATTCAAAGAC

ORF - retro_pvam_343 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.89 %
Parental protein coverage: 98.9 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTY
AK..KKV...GKY.T.YG.SLRK.VK.IEISQH.KYTCS.CGKTKMKR.AVGI.HC.SCMK.VAGGAWTY
RetrocopyAKYIKKVVVIGKYKTHYGTSLRKIVKRIEISQHVKYTCS-CGKTKMKRQAVGICHCSSCMKMVAGGAWTY
ParentalNTTSAVTVKSAIRRLKELKD
.TTSA.TVKSAIRRLKE.KD
RetrocopyTTTSALTVKSAIRRLKEFKD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_343 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 69 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000337724 retrocopies
Latimeria chalumnae ENSLACG000000115781 retrocopy
Loxodonta africana ENSLAFG000000068495 retrocopies
Macropus eugenii ENSMEUG0000000468023 retrocopies
Otolemur garnettii ENSOGAG000000008173 retrocopies
Petromyzon marinus ENSPMAG000000000011 retrocopy
Pteropus vampyrus ENSPVAG00000006102 12 retrocopies



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