RetrogeneDB ID:

retro_ogar_3003

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873695.1:1161937..1162173(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000000817
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_3003
GGTCAGGATGGTCAGAAAGTACGGGCCTCCATCCAGAAAATGGTGAAGAAAACTGAAATCAGTCAGCACGCCAAGTACAC
TAGTTCTTCTGTGGCAAAACCATGAAGGGACGAGCTGTAGTGATCTAACACTGTGGCTCCTGTGTGAAAACAGCAGCCAG
AGGTGCACAGACCTCCAACACCACCACCCCTGTCACAGTGAAGTCTGCCATCAGAAGACCAGAGGCACTGAAAGAC

ORF - retro_ogar_3003 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.14 %
Parental protein coverage: 87.91 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGKYGTRYGASLRKMVKKIEISQHAKYTCS-FCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVK
G..G....AS..KMVKK.EISQHAKYT.S.FCGKT.MK.RAV.I.HCGSC.KT.A.GA.T.NTT..VTVK
RetrocopyGQDGQKVRASIQKMVKKTEISQHAKYTSS<FCGKT-MKGRAVVI*HCGSCVKTAARGAQTSNTTTPVTVK
ParentalSAIRRLKELKD
SAIRR...LKD
RetrocopySAIRRPEALKD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3003 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 69 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000337724 retrocopies
Latimeria chalumnae ENSLACG000000115781 retrocopy
Loxodonta africana ENSLAFG000000068495 retrocopies
Macropus eugenii ENSMEUG0000000468023 retrocopies
Otolemur garnettii ENSOGAG00000000817 3 retrocopies
retro_ogar_1317, retro_ogar_3003 , retro_ogar_69,
Petromyzon marinus ENSPMAG000000000011 retrocopy
Pteropus vampyrus ENSPVAG0000000610212 retrocopies



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