RetrogeneDB ID:

retro_pvam_652

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_57:146451..146680(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL37A
Ensembl ID:ENSPVAG00000006102
Aliases:None
Description:ribosomal protein L37a [Source:HGNC Symbol;Acc:10348]


Retrocopy-Parental alignment summary:






>retro_pvam_652
GGGACCTGTTATAGCGTCTCCCTCAGAAAATAGTGAAGAAAATTGAAATCAGCCAACAAGCAAAGTATATCCGCTCCTTC
TGTAGCAAAACAAAGATGAAGAGATGAGCTATAGTGATCTGGCATTGCAGATCCTACATAAAAATGGTAGTGGGTCATGC
CTGCACTAACAACACCATGTCTGCAGTCACAGTAAAGTCCACCATTCGAAGACAGAAGAATTGAAAGAC

ORF - retro_pvam_652 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.62 %
Parental protein coverage: 84.62 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalGTRYGASLRK-MVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAI
GT.Y..SLRK..VKKIEISQ.AKY..SFC.KTKMKR.A..IWHC.S..K.V.G.A.T.NT.SAVTVKS.I
RetrocopyGTCYSVSLRK<IVKKIEISQQAKYIRSFCSKTKMKR*AIVIWHCRSYIKMVVGHACTNNTMSAVTVKSTI
ParentalRRLK-ELKD
RR.K.ELKD
RetrocopyRRQK<ELKD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_652 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 69 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000337724 retrocopies
Latimeria chalumnae ENSLACG000000115781 retrocopy
Loxodonta africana ENSLAFG000000068495 retrocopies
Macropus eugenii ENSMEUG0000000468023 retrocopies
Otolemur garnettii ENSOGAG000000008173 retrocopies
Petromyzon marinus ENSPMAG000000000011 retrocopy
Pteropus vampyrus ENSPVAG00000006102 12 retrocopies



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