Parental gene:

RPL37A, ENSLACG00000011578

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH127593.1:615887..627012(+)


>ENSLACG00000011578
ATGGCCAAGCGCACCAAGAAAGTCGGAATTGTAGGTAAATACGGTACCCGTTATGGTGCCTCCCTCAGGAAAATGGTTAA
GAAAATTGAAATCAGTCAACATGCTAAATACACATGCTCATTCTGTGGCAAGACCAAGATGAAGAGAAGGGCTGTAGGTA
TCTGGCACTGTGGATCCTGCAGGAAGACAGTTGCAGGTGGCGCCTGGACATACAACACCACCTCTGCTGTCACAGTGAGA
TCTGCAATCAGAAGACTGAAGGAATTGAAAGACCAGTAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 1383 .50 RPM
DRP000627_kidney 863 .63 RPM
DRP000627_pelvic_fin 1472 .51 RPM
DRP000627_pharynx 594 .65 RPM
DRP000627_gill 920 .84 RPM
DRP000627_tail_muscle 454 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003377 ortholog_one2many 24 retrogenes
retro_amel_109, retro_amel_1170, retro_amel_1197, retro_amel_1204, retro_amel_1248, retro_amel_1310, retro_amel_1349, retro_amel_1534, retro_amel_1597, retro_amel_1724, retro_amel_1815, retro_amel_1910, retro_amel_1929, retro_amel_248, retro_amel_424, retro_amel_428, retro_amel_475, retro_amel_482, retro_amel_606, retro_amel_737, retro_amel_809, retro_amel_83, retro_amel_920, retro_amel_942,
Bos taurus ENSBTAG00000003846 ortholog_one2one 9 retrogenes
retro_btau_1039, retro_btau_1070, retro_btau_1083, retro_btau_1240, retro_btau_1269, retro_btau_1366, retro_btau_1531, retro_btau_382, retro_btau_437,
Choloepus hoffmanni ENSCHOG00000004000 ortholog_one2one 14 retrogenes
retro_chof_1281, retro_chof_1338, retro_chof_1734, retro_chof_1744, retro_chof_1839, retro_chof_1866, retro_chof_1885, retro_chof_2338, retro_chof_2566, retro_chof_2645, retro_chof_298, retro_chof_731, retro_chof_814, retro_chof_885,
Callithrix jacchus ENSCJAG00000012417 ortholog_one2many 7 retrogenes
retro_cjac_1060, retro_cjac_1514, retro_cjac_159, retro_cjac_237, retro_cjac_3178, retro_cjac_335, retro_cjac_888,
Equus caballus ENSECAG00000012046 ortholog_one2many 6 retrogenes
retro_ecab_220, retro_ecab_48, retro_ecab_552, retro_ecab_735, retro_ecab_741, retro_ecab_803,
Echinops telfairi ENSETEG00000014352 ortholog_one2one 34 retrogenes
retro_etel_1002, retro_etel_1038, retro_etel_1090, retro_etel_1098, retro_etel_1205, retro_etel_121, retro_etel_1359, retro_etel_1426, retro_etel_1448, retro_etel_164, retro_etel_1862, retro_etel_1873, retro_etel_1977, retro_etel_2035, retro_etel_2036, retro_etel_2105, retro_etel_2215, retro_etel_238, retro_etel_277, retro_etel_304, retro_etel_305, retro_etel_307, retro_etel_364, retro_etel_441, retro_etel_478, retro_etel_634, retro_etel_728, retro_etel_742, retro_etel_784, retro_etel_812, retro_etel_817, retro_etel_829, retro_etel_866, retro_etel_907,
Felis catus ENSFCAG00000027010 ortholog_one2one 21 retrogenes
retro_fcat_1001, retro_fcat_1070, retro_fcat_1099, retro_fcat_1221, retro_fcat_1343, retro_fcat_1364, retro_fcat_1403, retro_fcat_149, retro_fcat_1644, retro_fcat_1662, retro_fcat_1704, retro_fcat_1738, retro_fcat_1756, retro_fcat_1850, retro_fcat_1918, retro_fcat_1940, retro_fcat_2018, retro_fcat_271, retro_fcat_595, retro_fcat_612, retro_fcat_633,
Homo sapiens ENSG00000197756 ortholog_one2one 6 retrogenes
retro_hsap_1086, retro_hsap_2482, retro_hsap_3542, retro_hsap_3773, retro_hsap_764, retro_hsap_926,
Gorilla gorilla ENSGGOG00000014827 ortholog_one2many 5 retrogenes
retro_ggor_1546, retro_ggor_2393, retro_ggor_2538, retro_ggor_2636, retro_ggor_633,
Loxodonta africana ENSLAFG00000006849 ortholog_one2many 5 retrogenes
retro_lafr_1010, retro_lafr_1015, retro_lafr_109, retro_lafr_987, retro_lafr_991,
Macropus eugenii ENSMEUG00000004680 ortholog_one2many 23 retrogenes
retro_meug_1094, retro_meug_111, retro_meug_1120, retro_meug_1289, retro_meug_1302, retro_meug_1399, retro_meug_1600, retro_meug_1705, retro_meug_2021, retro_meug_2061, retro_meug_2143, retro_meug_2173, retro_meug_24, retro_meug_290, retro_meug_458, retro_meug_463, retro_meug_496, retro_meug_502, retro_meug_571, retro_meug_691, retro_meug_813, retro_meug_814, retro_meug_83,
Myotis lucifugus ENSMLUG00000000762 ortholog_one2many 1 retrogene
retro_mluc_208,
Macaca mulatta ENSMMUG00000019544 ortholog_one2one 11 retrogenes
retro_mmul_1123, retro_mmul_1639, retro_mmul_1667, retro_mmul_1811, retro_mmul_1892, retro_mmul_1942, retro_mmul_1958, retro_mmul_2468, retro_mmul_456, retro_mmul_590, retro_mmul_844,
Monodelphis domestica ENSMODG00000025485 ortholog_one2many 9 retrogenes
retro_mdom_1106, retro_mdom_1555, retro_mdom_1848, retro_mdom_1934, retro_mdom_350, retro_mdom_521, retro_mdom_771, retro_mdom_805, retro_mdom_975,
Mus musculus ENSMUSG00000046330 ortholog_one2one 18 retrogenes
retro_mmus_1036, retro_mmus_1764, retro_mmus_1979, retro_mmus_1993, retro_mmus_2070, retro_mmus_2114, retro_mmus_2594, retro_mmus_2768, retro_mmus_3010, retro_mmus_3130, retro_mmus_322, retro_mmus_3367, retro_mmus_350, retro_mmus_508, retro_mmus_577, retro_mmus_589, retro_mmus_699, retro_mmus_830,
Nomascus leucogenys ENSNLEG00000007276 ortholog_one2one 8 retrogenes
retro_nleu_129, retro_nleu_1621, retro_nleu_1926, retro_nleu_2271, retro_nleu_2623, retro_nleu_271, retro_nleu_396, retro_nleu_406,
Otolemur garnettii ENSOGAG00000000817 ortholog_one2many 3 retrogenes
retro_ogar_1317, retro_ogar_3003, retro_ogar_69,
Ochotona princeps ENSOPRG00000004436 ortholog_one2one 10 retrogenes
retro_opri_1043, retro_opri_1060, retro_opri_1188, retro_opri_260, retro_opri_318, retro_opri_430, retro_opri_471, retro_opri_864, retro_opri_870, retro_opri_994,
Procavia capensis ENSPCAG00000006891 ortholog_one2one 5 retrogenes
retro_pcap_185, retro_pcap_28, retro_pcap_343, retro_pcap_414, retro_pcap_423,
Petromyzon marinus ENSPMAG00000000001 ortholog_one2one 1 retrogene
retro_pmar_11,
Pongo abelii ENSPPYG00000025878 ortholog_one2many 1 retrogene
retro_pabe_62,
Pan troglodytes ENSPTRG00000029029 ortholog_one2one 6 retrogenes
retro_ptro_1436, retro_ptro_2408, retro_ptro_2558, retro_ptro_535, retro_ptro_642, retro_ptro_738,
Pteropus vampyrus ENSPVAG00000006102 ortholog_one2one 12 retrogenes
retro_pvam_1074, retro_pvam_1346, retro_pvam_169, retro_pvam_204, retro_pvam_343, retro_pvam_48, retro_pvam_652, retro_pvam_658, retro_pvam_669, retro_pvam_761, retro_pvam_765, retro_pvam_90,
Sarcophilus harrisii ENSSHAG00000013417 ortholog_one2one 10 retrogenes
retro_shar_133, retro_shar_197, retro_shar_246, retro_shar_322, retro_shar_339, retro_shar_460, retro_shar_466, retro_shar_605, retro_shar_611, retro_shar_642,
Tupaia belangeri ENSTBEG00000007409 ortholog_one2one 108 retrogenes
retro_tbel_1089, retro_tbel_1095, retro_tbel_1113, retro_tbel_1168, retro_tbel_1198, retro_tbel_1204, retro_tbel_1218, retro_tbel_1244, retro_tbel_1345, retro_tbel_1352, retro_tbel_141, retro_tbel_1434, retro_tbel_1466, retro_tbel_1471, retro_tbel_148, retro_tbel_1489, retro_tbel_1502, retro_tbel_151, retro_tbel_1534, retro_tbel_1683, retro_tbel_1714, retro_tbel_1807, retro_tbel_1835, retro_tbel_1838, retro_tbel_1922, retro_tbel_194, retro_tbel_1973, retro_tbel_1992, retro_tbel_1995, retro_tbel_2002, retro_tbel_2044, retro_tbel_2083, retro_tbel_209, retro_tbel_2101, retro_tbel_2178, retro_tbel_2190, retro_tbel_223, retro_tbel_2381, retro_tbel_2631, retro_tbel_2699, retro_tbel_2705, retro_tbel_2725, retro_tbel_2780, retro_tbel_2813, retro_tbel_2844, retro_tbel_285, retro_tbel_286, retro_tbel_2985, retro_tbel_3022, retro_tbel_3048, retro_tbel_3108, retro_tbel_3118, retro_tbel_3211, retro_tbel_3490, retro_tbel_350, retro_tbel_3565, retro_tbel_3593, retro_tbel_3632, retro_tbel_3641, retro_tbel_3651, retro_tbel_3757, retro_tbel_3784, retro_tbel_3837, retro_tbel_3901, retro_tbel_3910, retro_tbel_3912, retro_tbel_3916, retro_tbel_3919, retro_tbel_3955, retro_tbel_3969, retro_tbel_3970, retro_tbel_4055, retro_tbel_4098, retro_tbel_4099, retro_tbel_4117, retro_tbel_412, retro_tbel_4148, retro_tbel_4188, retro_tbel_420, retro_tbel_4244, retro_tbel_4382, retro_tbel_4452, retro_tbel_4522, retro_tbel_4524, retro_tbel_458, retro_tbel_4586, retro_tbel_4588, retro_tbel_4613, retro_tbel_4703, retro_tbel_472, retro_tbel_500, retro_tbel_566, retro_tbel_574, retro_tbel_583, retro_tbel_590, retro_tbel_594, retro_tbel_595, retro_tbel_622, retro_tbel_648, retro_tbel_681, retro_tbel_739, retro_tbel_767, retro_tbel_790, retro_tbel_834, retro_tbel_870, retro_tbel_893, retro_tbel_907, retro_tbel_998,
Tarsius syrichta ENSTSYG00000004258 ortholog_one2many 11 retrogenes
retro_tsyr_1122, retro_tsyr_1704, retro_tsyr_1707, retro_tsyr_1831, retro_tsyr_1999, retro_tsyr_213, retro_tsyr_278, retro_tsyr_316, retro_tsyr_321, retro_tsyr_800, retro_tsyr_815,
Vicugna pacos ENSVPAG00000002529 ortholog_one2one 5 retrogenes
retro_vpac_208, retro_vpac_240, retro_vpac_271, retro_vpac_307, retro_vpac_479,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_71 64.04 95.65
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Download FASTA sequences of all ENSLACG00000011578 retrocopies