RetrogeneDB ID:

retro_amel_809

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192652.1:1348711..1348983(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSAMEG00000003377
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_amel_809
GCTAACTGCACCAAGAAGGTCGGAATCATGGGTAAATACGGGACCCATTATGGTGCCTCCCTCAGGAAAATGGTGAAGAA
GATGGAAATAAGCCAGCACACTAAGTACACTTGCTCCTTCTGTGGCAAAACCAAGATGAAAAAATGAGCTGTGGGGTTCG
GCACAGTGGTTCCTGCATGAAAACCGAAGCCCTTGGCATGTGGACCTACACCATCACTTCTGCGGTCACAGCAAAGTCGG
CCATCAGAAGACTGAAGGAGTTGAAAGACCAG

ORF - retro_amel_809 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.43 %
Parental protein coverage: 98.91 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAV-GIWHCGSCMKTVAGGAWT
A..TKKVGI.GKYGT.YGASLRKMVKK.EISQH.KYTCSFCGKTKMK..AV.G..H.GSCMKT.A.G.WT
RetrocopyANCTKKVGIMGKYGTHYGASLRKMVKKMEISQHTKYTCSFCGKTKMKK*AV<GVRHSGSCMKTEALGMWT
ParentalYNTTSAVTVKSAIRRLKELKDQ
Y..TSAVT.KSAIRRLKELKDQ
RetrocopyYTITSAVTAKSAIRRLKELKDQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_809 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_809 was not experimentally validated.

Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 83 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG00000003377 24 retrocopies
Callithrix jacchus ENSCJAG000000124177 retrocopies
Equus caballus ENSECAG000000120466 retrocopies
Latimeria chalumnae ENSLACG000000115781 retrocopy
Loxodonta africana ENSLAFG000000068495 retrocopies
Macropus eugenii ENSMEUG0000000468023 retrocopies
Myotis lucifugus ENSMLUG000000007621 retrocopy
Otolemur garnettii ENSOGAG000000008173 retrocopies
Petromyzon marinus ENSPMAG000000000011 retrocopy
Pteropus vampyrus ENSPVAG0000000610212 retrocopies



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