RetrogeneDB ID: | retro_sara_672 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_256216:116981..117325(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL27 | ||
Ensembl ID: | ENSSARG00000011131 | ||
Aliases: | None | ||
Description: | ribosomal protein L27 [Source:HGNC Symbol;Acc:10328] |
Percent Identity: | 80.17 % |
Parental protein coverage: | 84.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMP-TRYSVDIP |
K.VI.KNIDDGTSDRP.SH.L.A.ID.Y..KVTAA..KKKIA.RSKIKS.VKVYNYNHLMP.TRYSVDIP | |
Retrocopy | KVVIMKNIDDGTSDRPNSHVLAAKIDCYSHKVTAARAKKKIAQRSKIKSSVKVYNYNHLMP<TRYSVDIP |
Parental | LDKTILNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF |
LDKTIL.KDVFRDP.LKRK..R.AKV.FEERYK..KNKWFFQKL.F | |
Retrocopy | LDKTILHKDVFRDPVLKRKTQRGAKVNFEERYKASKNKWFFQKL*F |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |