Parental gene:

RPL27, ENSSSCG00000025507

Aliases:None
Description:Sus scrofa ribosomal protein L27 (RPL27), mRNA. [Source:RefSeq mRNA;Acc:NM_001097479]
Organism:Pig (Sus scrofa)
Coordinates:12:19987052..19989521(+)


>ENSSSCG00000025507
ATGGGCAAGTTCATGAAACCCGGGAAGGTGGTGCTGGTCCTGGCTGGTCGCTACTCCGGACGCAAAGCGGTCATCGTAAA
GAACATTGATGATGGCTCAGACCGACCCTACAGCCATGCTCTGGTGGCTGGAATTGATCGCTATCCCCGCAAAGTGACAG
CTGCCATGGGCAAGAAGAAAATTGCCAAGAGATCAAAGATTAAGTCTTTTGTGAAAGTTTATAATTATAATCACCTCATG
CCCACAAGGTACTCCGTGGATATCCCCTTGGACAAAACTGTTGTCAATAAGGATGTCTTCAGAGACCCTGCACTCAAACG
CAAGGCCCGACGAGAGGCCAAGGTCAAGTTCGAGGAGAGATACAAGACCGGCAAGAACAAATGGTTCTTCCAGAAGCTGC
GGTTTTAG

Library Parental gene expression (RPM)
SRP014902_placenta 217 .41 RPM
SRP014902_testis 272 .57 RPM
SRP018856_adipose 318 .32 RPM
SRP018288_kidney 187 .26 RPM
SRP018288_lung 86 .45 RPM
SRP018288_liver 163 .43 RPM
SRP018288_heart 174 .45 RPM
SRP035408_liver 191 .43 RPM
SRP035408_brain 226 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000200 ortholog_one2many 3 retrogenes
retro_amel_122, retro_amel_37, retro_amel_674,
Bos taurus ENSBTAG00000017441 ortholog_one2many 6 retrogenes
retro_btau_1113, retro_btau_129, retro_btau_1565, retro_btau_1855, retro_btau_338, retro_btau_394,
Canis familiaris ENSCAFG00000014630 ortholog_one2many 6 retrogenes
retro_cfam_1193, retro_cfam_2109, retro_cfam_339, retro_cfam_364, retro_cfam_947, retro_cfam_959,
Callithrix jacchus ENSCJAG00000013067 possible_ortholog 9 retrogenes
retro_cjac_1345, retro_cjac_1350, retro_cjac_1543, retro_cjac_1630, retro_cjac_2210, retro_cjac_275, retro_cjac_2828, retro_cjac_369, retro_cjac_776,
Equus caballus ENSECAG00000007500 ortholog_one2one 1 retrogene
retro_ecab_132,
Felis catus ENSFCAG00000013142 ortholog_one2many 6 retrogenes
retro_fcat_1026, retro_fcat_1184, retro_fcat_1824, retro_fcat_228, retro_fcat_698, retro_fcat_78,
Gorilla gorilla ENSGGOG00000026039 possible_ortholog 6 retrogenes
retro_ggor_1741, retro_ggor_1852, retro_ggor_2546, retro_ggor_2630, retro_ggor_298, retro_ggor_907,
Loxodonta africana ENSLAFG00000014220 possible_ortholog 3 retrogenes
retro_lafr_443, retro_lafr_739, retro_lafr_965,
Myotis lucifugus ENSMLUG00000004119 possible_ortholog 1 retrogene
retro_mluc_359,
Macaca mulatta ENSMMUG00000008090 possible_ortholog 7 retrogenes
retro_mmul_1646, retro_mmul_1997, retro_mmul_418, retro_mmul_478, retro_mmul_52, retro_mmul_680, retro_mmul_925,
Monodelphis domestica ENSMODG00000015128 ortholog_one2one 1 retrogene
retro_mdom_1141,
Mustela putorius furo ENSMPUG00000009913 ortholog_one2one 11 retrogenes
retro_mputfur_1041, retro_mputfur_1108, retro_mputfur_1182, retro_mputfur_1307, retro_mputfur_1530, retro_mputfur_303, retro_mputfur_413, retro_mputfur_595, retro_mputfur_675, retro_mputfur_735, retro_mputfur_980,
Mus musculus ENSMUSG00000063316 possible_ortholog 2 retrogenes
retro_mmus_223, retro_mmus_277,
Nomascus leucogenys ENSNLEG00000011901 possible_ortholog 2 retrogenes
retro_nleu_334, retro_nleu_45,
Oryctolagus cuniculus ENSOCUG00000003872 possible_ortholog 1 retrogene
retro_ocun_263,
Otolemur garnettii ENSOGAG00000003940 possible_ortholog 14 retrogenes
retro_ogar_1091, retro_ogar_1297, retro_ogar_1478, retro_ogar_1692, retro_ogar_1887, retro_ogar_2189, retro_ogar_2354, retro_ogar_2625, retro_ogar_2687, retro_ogar_2915, retro_ogar_3207, retro_ogar_3294, retro_ogar_3381, retro_ogar_618,
Rattus norvegicus ENSRNOG00000020674 possible_ortholog 8 retrogenes
retro_rnor_1150, retro_rnor_125, retro_rnor_1257, retro_rnor_1968, retro_rnor_2594, retro_rnor_2989, retro_rnor_386, retro_rnor_414,
Sorex araneus ENSSARG00000011131 ortholog_one2one 10 retrogenes
retro_sara_254, retro_sara_292, retro_sara_493, retro_sara_498, retro_sara_547, retro_sara_611, retro_sara_62, retro_sara_672, retro_sara_685, retro_sara_696,
Sarcophilus harrisii ENSSHAG00000012042 ortholog_one2many 4 retrogenes
retro_shar_10, retro_shar_253, retro_shar_730, retro_shar_741,
Tursiops truncatus ENSTTRG00000011739 ortholog_one2one 2 retrogenes
retro_ttru_1049, retro_ttru_1535,
Vicugna pacos ENSVPAG00000002574 ortholog_one2one 1 retrogene
retro_vpac_324,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_109 85.40 100.00
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2. retro_sscr_576 92.70 100.00
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3. retro_sscr_683 73.75 58.52
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4. retro_sscr_943 62.39 79.26
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5. retro_sscr_1154 78.10 100.00
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Download FASTA sequences of all ENSSSCG00000025507 retrocopies