RetrogeneDB ID: | retro_tbel_4017 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_5433:201793..202291(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSTBEG00000015997 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 90.64 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSSGNAKIGYPAPNFKATAVMPDGQFKDVSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
.SSGNAKIG.PAPNFKAT.....GQFKD.SL.DYKG.YVVFFFYPLDFTFVCP.EIIAFSDRAE.FKKLN | |
Retrocopy | ISSGNAKIGHPAPNFKATG----GQFKDISLNDYKG-YVVFFFYPLDFTFVCPMEIIAFSDRAEKFKKLN |
Parental | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
C.V.GASVDSHF.HLAWINT.KKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR | |
Retrocopy | C*VTGASVDSHFFHLAWINTLKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
Parental | QITVNDLPVGRSVDETLRLVQAFQFTDKHGE |
QITVNDLPVGRSVDETLRLVQAFQFTDKHGE | |
Retrocopy | QITVNDLPVGRSVDETLRLVQAFQFTDKHGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |